Protein Info for DZA65_RS14460 in Dickeya dianthicola ME23

Annotation: TraM recognition domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 624 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 29 to 47 (19 residues), see Phobius details amino acids 59 to 83 (25 residues), see Phobius details amino acids 96 to 117 (22 residues), see Phobius details PF10412: TrwB_AAD_bind" amino acids 418 to 542 (125 residues), 23.1 bits, see alignment E=3.3e-09

Best Hits

KEGG orthology group: None (inferred from 94% identity to eca:ECA1609)

Predicted SEED Role

"MobB protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4CQP3 at UniProt or InterPro

Protein Sequence (624 amino acids)

>DZA65_RS14460 TraM recognition domain-containing protein (Dickeya dianthicola ME23)
MILNKLAVSLSPIVNGALSFIAFMQQHQLMLALLSGLTMPFFASMKSDERQKAPLWQKLI
IAFSLLCFLSGTMAPVVIWISQWLYKGRVVASIPVLAWPVLITFTVTGFIFHILLRRVLT
PELDKIKKRLVRKTTLERELRTDVRRVKSLLPETLHYDPLDYIDLNKGLFIGMDRNVQPM
YLPLKDWQKQHADIIGTTGAGKGVATGILLYQSILAGEGVFVMDPKDDEWAPHLYRKACE
DAGKPFALIDLRKQQYQLNLIEDITPDELEELFVAGFSLAEKGQESDFYRIDDRKAARIA
AQFVTRNTASTIRDVYNGDYVQGIADKIKAFFGKIEELALLNAINAPKGFSLNKIFEEGG
CCYVIGSMRNSKIITAQRMLLVRLYQLAERRERVKDVPRPIAIYLSELKYHLSRPALEGL
GAARDKGVHIIMDHQSIADLKDCPADLKGEAVVGAVVENAKFKLVYRVMDPDTAEWVARM
SGTILVDDEVRKAKTDAVLTETIDSERTIRQAEHFFTDSNMILNLPDFVSFIFTTKALPS
ASLISPIRVKKRELEICAVSPAIAATAATINIALDFSEEETSPGPASTPDITTTRPDLFF
EEVGEKDTTIPNADKEENPSLLDF