Protein Info for DZA65_RS14230 in Dickeya dianthicola ME23

Annotation: KR domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2544 PF00550: PP-binding" amino acids 61 to 125 (65 residues), 41.3 bits, see alignment (E = 6.6e-14) amino acids 958 to 1023 (66 residues), 53.9 bits, see alignment (E = 8.1e-18) amino acids 1115 to 1180 (66 residues), 51.1 bits, see alignment (E = 5.8e-17) amino acids 2482 to 2529 (48 residues), 36.2 bits, see alignment (E = 2.7e-12) PF00109: ketoacyl-synt" amino acids 221 to 466 (246 residues), 280.8 bits, see alignment E=5.1e-87 amino acids 1234 to 1479 (246 residues), 305.3 bits, see alignment E=1.7e-94 PF02801: Ketoacyl-synt_C" amino acids 475 to 605 (131 residues), 123.7 bits, see alignment 1.9e-39 amino acids 1487 to 1604 (118 residues), 133.3 bits, see alignment 2e-42 PF16197: KAsynt_C_assoc" amino acids 609 to 704 (96 residues), 44.4 bits, see alignment (E = 9.4e-15) amino acids 1607 to 1696 (90 residues), 42.4 bits, see alignment (E = 3.7e-14) PF22621: CurL-like_PKS_C" amino acids 677 to 742 (66 residues), 44.6 bits, see alignment (E = 5.3e-15) amino acids 1671 to 1737 (67 residues), 40.9 bits, see alignment (E = 7.3e-14) PF22336: RhiE-like_linker" amino acids 679 to 743 (65 residues), 55.9 bits, see alignment (E = 1.5e-18) amino acids 1673 to 1744 (72 residues), 60.2 bits, see alignment (E = 6.6e-20) PF08659: KR" amino acids 2124 to 2304 (181 residues), 117.9 bits, see alignment 2.2e-37

Best Hits

Predicted SEED Role

"Flagellar hook-length control protein FliK" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385Y078 at UniProt or InterPro

Protein Sequence (2544 amino acids)

>DZA65_RS14230 KR domain-containing protein (Dickeya dianthicola ME23)
MTGKENRTRDLHESARKILEAELMQSAVEHSQTVSDTAGAIPDSPFSEVKGGDYREILLQ
DILGIFSVILKLPTAKIDREEKISTYGVDSIVITEIMGRIADSLGVSLSAAIFFEARNIE
ELTDIIIKRFGPEVVQRYDAQSVNDDRQPAGYVHREDVRQTAVVGPSAPSLSSGTASARR
IRELMERSYRLNQKRDRFHSTNDERQQTNKIEANQFSGNYEPIAIIGMDGIFAQSSTIDE
LQRHLYQGQDCISEIPRERWDWKAIYGNPKDGEFTNVKYAGFIKDVDKFDPAFFGISPRE
AQIMDPQHRLFLESTWRLIESSGYAPSSFAGKKVGVFAGINLQDYAETVLNAQPRNIVEL
TAIPHMFCPNRISYLLDVHGPSEIIDTACSSSLVAIHRAVMSIQHGDCDMAIAGGANLIL
SPKMHILYSKAEMICEDGRCKTFSADANGYARGEGVGVVLLKKLKAAQADKDHILGVIIG
SAENHGGAATSLMAPNPNAQAQLVRDAHMKSGVDPRSITYIECHGTGTPLGDPIEVNGLK
MAFNDLYREHGLNPAANSGKAAVKHCALGSVKSNIGHTETAAGVAGVIKVLLAMRDEYLP
KSLHCQQLNPLLELEDSPFYVLQEGQTWQRPTIGYAQQPLRAGVSSFGAGGSNVHLVIEE
YRQEPDKVTSLEHQPEVIVLSAKNSERLQVYAQQLMQYVTENSAHVASHFRQFAYTLQTG
RDAMDARVAFVAEDVASLLRQLAIISRGPQAAASEGTIFVNCDESGRLPNLDIQDITRWW
QSRQWTKIAQAWVETRSVDWLQLYAGQRYSRLALPTYPFDRQRYWIKETRQKPEPERAVE
QPTTDSIKANHSVKINHSGKMTLPPLTLKRDVSLPAAPSGASSAAEQRNGKTADIHRGHD
TNGAATDSQMTGSAKAINGAKAINGVNATNGVNVINGNGALHPEQRHGGVSLAGVIEKLR
VSLAQALCAPESDIHVDRSFAEMGLDSIVGAEWVHEINRQLGSSLSATRLYDYSSVRQLA
QFIVLDGGQREAADKHVPETRNTGAALQHEEVLQHEEVLQHEEVLQHEDNKIATEQRSAT
VHAPQANHAPQAIHAPPAAPISADQNAQVAEITQLLKTSLADALYITPEAIRNHRAFSEL
GLDSIIGAEWLNEINKRLGTRLSATRLYDYPNIHALAEYIATQLDGVTLPPKPVAAASTS
VPEHEDLPRDTLTSAAPLSAAIPDDDRVINRQAEKIAIIGMSGRYPDAENLDQYWDNLAD
GRNAVREVPKARWDVDHYFDADRSKDGKIYCKWLGALSDIDSFDPLFFSISPAEAEGMDP
QHRLFLQEGYKAFEDAGYSPEELSHKKCGVYMGIMSYEYAHMMLNSASPLSATGNSFAIG
AARIPYFLNLKGPAIPVDTACSSSLVTTHLAVQALQQGEIDLALVGGVSLYLMPETYIGM
CSAGMLSPEGQCKTFDNSADGFVPGEGVGCLVLKRLSQAEIDGDSIYGVIIGSGINQDGK
TNGITAPSVNSQIELEREVYRKHQINPDSISYIETHGTGTKLGDPIELEALESVFREWTP
RKNFCGLGSVKSNIGHTSAASGMASMQKVLLSMKHRQLVPSLHFRTPNQHFGFDDSPFYV
NTQLTPWQHDERQPRRAAVSSFGYSGTNAHLVIEEYLSPAVETAPVTKPVLIVLSAMRED
RLPLMAGNLLAWLQREQTDGHHVDLRQLAYTLQRGRQVMEERLAFVAGSVSELQEILTQF
IAGDISAPSLCRGRVNYNAPSYKAFVDTPEFSAVIEQWTRQQNLSQLAGLWVTGLDIPWD
LLYLGSEQAGQSTEQRFPSRINLPTYPFFRQSCWFEEKAPPTAVTTVDVRPVLSEDTATV
RAPEATETGANAQPIAKETQWIRATETWVEVKANEDSQWGERIKACSDRQILVLSHTAAD
YRDLEQVCRQVQQLADMPQPIWDVQHITLQGSALQDQPGINALEAGLAAAISDPGKPLAV
FLILPHGTEAQTGLAYRCVQAVQAVARLNPVQFYCCHRADYEHGLTITDVQHEALCGLFR
SAILETVGHRYRSLIVDPRSTGQEVALQLMQTWLGDDMPAHEPGKNAQAVRTPTIRFSGG
RRYELRVGETDEHEVPNALFRTGATYLMVGALGETGEQVCQVLGQNYQAQLVIFSRRPEH
QVAPILARIRASGARVIYRAVDILDLERVNQAMQSLKSEGITLHGVVQMARQVSDGAIVN
KSWGAFRQMMAAKVSGTLNIDAVTAGEPLEFFLMFSSVAAFGIQGSPDYAYSAAFQNAFA
RYRQRLVSLKQRQGLVSSVCWGQWDVDGAVNRTRLAGRLASLAQQGMGSIHAVAAVQQMQ
TGLTDGVTALVAVTDRHKARMLLGLSDDQTASVAVRPDHHIVDAVRLKIQHFRLGQLSPT
EFADYLSSLSLADLPACLQQEIGTVITAAQPVPPTVNAQLPDPQTARPETPEDTDGIKPA
EYDSELRSSLAFGIEKVMKLGSSLDWDKPLQDYGMDSIIAMQLSTTLEKQMKFPVQPNWL
IEHPTANLLMKKLRKQVGTGEIRL