Protein Info for DZA65_RS14025 in Dickeya dianthicola ME23

Annotation: flagella synthesis chaperone protein FlgN

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 145 PF05130: FlgN" amino acids 1 to 134 (134 residues), 79.2 bits, see alignment E=2.2e-26

Best Hits

Swiss-Prot: 46% identical to FLGN_YERE8: Flagella synthesis protein FlgN (flgN) from Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)

KEGG orthology group: K02399, flagella synthesis protein FlgN (inferred from 93% identity to ddd:Dda3937_04632)

Predicted SEED Role

"Flagellar biosynthesis protein FlgN" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4CDF0 at UniProt or InterPro

Protein Sequence (145 amino acids)

>DZA65_RS14025 flagella synthesis chaperone protein FlgN (Dickeya dianthicola ME23)
MEKLVKLLEQLLFNMCELEIVLSDEQLLLCAGHVDGPALQVITDKKGSLLSTIQHLDKIR
LQGESVLRVKAPYSSHVDLEQIWKNITALSESLRDKNQHNGLLLGYHLDHNEKALAVLKP
RHAQSLYGPDGQSRSNPISGRRISI