Protein Info for DZA65_RS13305 in Dickeya dianthicola ME23

Annotation: Fe-S cluster assembly protein SufB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 499 TIGR01980: FeS assembly protein SufB" amino acids 21 to 490 (470 residues), 633 bits, see alignment E=1.2e-194 PF19295: SufBD_N" amino acids 161 to 221 (61 residues), 48.4 bits, see alignment E=8.9e-17 PF01458: SUFBD_core" amino acids 229 to 470 (242 residues), 252.7 bits, see alignment E=3.2e-79

Best Hits

Swiss-Prot: 83% identical to SUFB_ECOLI: FeS cluster assembly protein SufB (sufB) from Escherichia coli (strain K12)

KEGG orthology group: K09014, Fe-S cluster assembly protein SufB (inferred from 98% identity to ddd:Dda3937_03668)

Predicted SEED Role

"Iron-sulfur cluster assembly protein SufB" in subsystem Staphylococcal phi-Mu50B-like prophages

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385XYI4 at UniProt or InterPro

Protein Sequence (499 amino acids)

>DZA65_RS13305 Fe-S cluster assembly protein SufB (Dickeya dianthicola ME23)
MARSNVDVSDDVQTWLDDGRYKEGFFTELAMDQLARGINEDVVRAISARRNEPEWMLAFR
LSAYRAWLQMEEPHWLKAHYERLNYQDYSYYSAPSCGQCDDSCGSQPGAQQQPAGDAAHG
NYLTREVEDAFDKLGVPVREGQDVAVDAIFDSVSVSTTYRDELAKQGIIFCSFSEAIQAH
PELVRQYLGTVVPANDNFFAALNAAVASDGTFVYIPKGVRCPMELSTYFRINAAKTGQFE
RTILIADDDSYVSYIEGCSAPVRDSYQLHAAVVEVIVNNNAEVKYSTVQNWFSGQGSEGG
ILNFVTKRALCAGDHARMSWTQSETGSAITWKYPSVILRGDYSVGEFFSVALTSGRQQAD
TGTKMIHIGKHTRSTIIAKGISAGHSENTYRGLVKIMPSATNARNFTQCDSMLIGGDCGA
HTFPYVEVRNNSAQLEHEATTSRIGEDQLFYCLQRGISEDDAISMIVNGFCKDVFSELPL
EFAVEAQKLLSISLEHSVG