Protein Info for DZA65_RS12635 in Dickeya dianthicola ME23

Annotation: recombinase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 186 PF00239: Resolvase" amino acids 3 to 135 (133 residues), 162.7 bits, see alignment E=6.1e-52 PF02796: HTH_7" amino acids 138 to 181 (44 residues), 36.3 bits, see alignment 5e-13

Best Hits

Swiss-Prot: 65% identical to PINE_ECOLI: Serine recombinase PinE (pinE) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 97% identity to ddd:Dda3937_03807)

MetaCyc: 65% identical to e14 prophage; site-specific DNA recombinase (Escherichia coli K-12 substr. MG1655)
5.99.1.-

Predicted SEED Role

"DNA-invertase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4CHR3 at UniProt or InterPro

Protein Sequence (186 amino acids)

>DZA65_RS12635 recombinase family protein (Dickeya dianthicola ME23)
MLIGYARVSTSDQNTELQKIALVGANCELIFEDQASGKHARRPGLRQALRKLKRGDTLIV
WKLDRLGRSVRDLITMVSDLQARGIHFRSLTDAIDTSTPAGRFFFHVMSALAEMERELIV
ERTRAGLAAARAAGRIGGRRRIMTPDAIEHARTLLTNGATRWQIANIIGVSEKTIYKYFP
ATKNRP