Protein Info for DZA65_RS12180 in Dickeya dianthicola ME23

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 67 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF09589: HrpA_pilin" amino acids 12 to 67 (56 residues), 84.4 bits, see alignment E=2.7e-28

Best Hits

Swiss-Prot: 91% identical to HRPA_DICCH: Hrp pili protein HrpA (hrpA) from Dickeya chrysanthemi

KEGG orthology group: None (inferred from 96% identity to dze:Dd1591_1897)

Predicted SEED Role

"Hrp pili protein hrpA (TTSS pilin hrpA)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4DFU5 at UniProt or InterPro

Protein Sequence (67 amino acids)

>DZA65_RS12180 hypothetical protein (Dickeya dianthicola ME23)
MMGLSNAASLAGMQTLDKTMAATTAMTTAAQAQKMKTDAISSITDGQMDSASKAMNSGQK
AAKAIQF