Protein Info for DZA65_RS11485 in Dickeya dianthicola ME23

Annotation: exodeoxyribonuclease V subunit gamma

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1168 PF04257: Exonuc_V_gamma" amino acids 10 to 366 (357 residues), 329.8 bits, see alignment E=1.7e-102 TIGR01450: exodeoxyribonuclease V, gamma subunit" amino acids 11 to 1107 (1097 residues), 1131.3 bits, see alignment E=0 PF17946: RecC_C" amino acids 846 to 1085 (240 residues), 156.8 bits, see alignment E=6.4e-50

Best Hits

KEGG orthology group: K03583, exodeoxyribonuclease V gamma subunit [EC: 3.1.11.5] (inferred from 93% identity to ddd:Dda3937_02947)

Predicted SEED Role

"Exodeoxyribonuclease V gamma chain (EC 3.1.11.5)" in subsystem DNA-replication (EC 3.1.11.5)

Isozymes

Compare fitness of predicted isozymes for: 3.1.11.5

Use Curated BLAST to search for 3.1.11.5

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385XYI9 at UniProt or InterPro

Protein Sequence (1168 amino acids)

>DZA65_RS11485 exodeoxyribonuclease V subunit gamma (Dickeya dianthicola ME23)
MSENRLQPGLMAIHSNHPEALRNVLVSWMAANPLGGLENELILVQSNGIGQWLKLALARD
TRDGGCGVAAALDIQLPSRFFWQVYRSVLGNEQVPETSPFDKSLLVWRLVRLLPELLTQP
EFAALARFLHQDTDLRKHYQLAERLADLFDQYQVYRADWLAQWAAGDDVLATSRRGVEPL
PEDQRWQPLLWRALLRDTGEALSGTSRAALHRRFLDEVQRRGDADRPAGLPSRVMVFGIS
SLPQQALELLAAIGRWIQIFMCVHNPCEHYWGNIIADKDLLRAERARQQRKPGMPEVIAL
EELHQHAHPLLAAWGKQGRDYIGLLDEYDQREQYEPLLQPLISRIDLFDSNGEDCLLNQL
QEDIRDLRPLTESRARWPAIDPYQDSSIRFHVAHSAQREVEVLHDQLLAAFAADPTLRPR
DVIVMVPDINGYAPHIQAVFGLIDRQDSRYIPFSVADRGPRQNNLLLAALERLLNLPQSR
VAVSDVLDLLEVPAVRQRFAIAEEQLPLLQRWIRAANVRWGLHARQRQSLDLPDAPEQNS
WFFGLRRMLLGYAVGAGDAWRDIEPLDEIGGLDAVPAGQLALLLDRLDYSWQQLCQPATP
IQWGERLRALLNTFFAADEGEDGFMLLQLDEGLQNWLEACESVALEQALPLSVVREHWLG
LFEQSSLTQPFFAGAVTFATLMPMRAIPFRHVCLLGMNDGDYPRNRVPLDFDLMGQDYRP
GDRSRREDDRYLFLEALLSARERLYLSWVGRSIHDNSERPPSVLVAQLRDHLSNGWRTAD
GQDVLPALTVEHRLQPFSPDYFTAGSPLFSYAREWRAGLLPQDGLLPQHAPATDAALDEY
RQDGVLTLRQLADFARDPVRSFFRLRLNVWFEQEDATSQDQEPFAIDALENWRLQHELIQ
VQKAALHQRIPREQALTEQLARIARRGELAPGGFTAVLEQDLAEPMADLFTRYEQERETW
PEPAPDEPLSLPDLPLEDWLNELRTDGQGNRCRLVLESGGLLHPTRRSYRLDKLVPFWVA
HLAGHLGGQPLHSTLVSKNGTVYLPALEPEQAKAYWQTLVEAWREGMRYPLPLAVKTGFR
WLEAGGEPEQPPDGEAGKAARQCYEEHDPANRKFAESASNAYLARAFPNFDQLWANGEFA
RWAQLLLAPLYQTLKAASAKNKKSGGQP