Protein Info for DZA65_RS11480 in Dickeya dianthicola ME23

Annotation: exodeoxyribonuclease V subunit beta

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1236 TIGR00609: exodeoxyribonuclease V, beta subunit" amino acids 10 to 1228 (1219 residues), 1053.4 bits, see alignment E=0 PF00580: UvrD-helicase" amino acids 17 to 464 (448 residues), 166.6 bits, see alignment E=2.3e-52 PF13361: UvrD_C" amino acids 771 to 859 (89 residues), 49.8 bits, see alignment 8.9e-17 PF12705: PDDEXK_1" amino acids 1001 to 1215 (215 residues), 34.2 bits, see alignment E=6.9e-12

Best Hits

KEGG orthology group: K03582, exodeoxyribonuclease V beta subunit [EC: 3.1.11.5] (inferred from 88% identity to ddc:Dd586_2007)

Predicted SEED Role

"Exodeoxyribonuclease V beta chain (EC 3.1.11.5)" in subsystem DNA-replication (EC 3.1.11.5)

Isozymes

Compare fitness of predicted isozymes for: 3.1.11.5

Use Curated BLAST to search for 3.1.11.5

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385XYA0 at UniProt or InterPro

Protein Sequence (1236 amino acids)

>DZA65_RS11480 exodeoxyribonuclease V subunit beta (Dickeya dianthicola ME23)
MTAHSLPSPLDVLRFPLAGSRLIEASAGTGKTFTIAMLYVRLVLGHGGEQAFSRPLNPPE
ILVVTFTDAATRELRDRIRARLAQAAGYFQPDGKDGKDGKDDKDDKDDEADPLLRALRAD
YPPEQWPACARKLQLAAEWMDEAAVSTIHGWCNRMLGEHAFDSGSLFNQTLETDQSDVLL
EVVRDYWRTFFFPLDARDVLELRDSWSSPEHFYRSVTPLLEYADEIGIDDLPAQIFSAVR
EEKTRQLTALKAPWPQWCGELRDLLNAAVAQKKADGRKLQARYFEAWLDKLQHWAASDET
TLDIGTGWTRLTPQGLRECWKVPEETPQHPALTAMEALQQQLSDLPEPRSQLLRHACRWV
SQRFRHEQESRAQMGFQDLLTRLDAALRGDNGERLAQRIRRQFPVAMIDEFQDTDPLQYR
IFDTLYRVADNDPQQGLILIGDPKQAIYAFRGADIYTYLRARRDTDGRHYTLGTNFRSTQ
AMVGAVNQVFMQAENRADGAGAFLFRQPDGGNPVPFLPVQANGRDEAWILEGAAAAALTC
WTLATDQPLSSAEYRQRMAAGCAREMVRLLQLGGQGRAGFAVPGQALRPVRPGDMAVLVN
TGREAMAVRAQLSARGVRSVYLSDRESVFDSPQAGELHCWLAACADPENDRLLRAALATP
LLGLSWQALDRLNHDEQEWERRVMQFVRYQSCWRQQGVLPMLRRLMWEFDVPRRLLAADN
ARALTDVLHLSELLQQASVHLDGEHALIRYLAEQCQADNPGGDTLKLRLESDADLVKVVT
VHKSKGLEYPLVFLPFACAFRAVNQRDVPLKYHDDDGQPRLELTASDEAVQRADHERLGE
DLRKFYVALTRARYALWLGMAPLKELEKSAPGYLLGAGEPLEPAQLAQPLSAWCGAHSRM
APLPETDDEVYRAELNTPALGQEPPLPDMRRHRWRITSYSGLQLAPEGHYREFREPSAGD
VPEVQSAQQETFSEPQAFAEHLPPLPAGLDMYSFPRGAAPGSFLHGLLEWAGKEGFAALA
AERHRVEDQVARRCNRQGWTQWIPMLTDWLMALLSQPLALPTSPGSAVSLAGLTQYQVEM
EFWFALSQVDTQVLDQQVSAATLAGEPRAVLMREQLNGMLKGFIDLVFEHQGRYYVLDYK
SNWLGADAADYDPPRMARAMLDHRYDLQLALYLFALHRLLKSRLPDYDYDRHVGGALYLF
LRSSQAPGGGVFAQRPDWALMEALERLFSGETEATA