Protein Info for DZA65_RS11335 in Dickeya dianthicola ME23

Annotation: HAMP domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 652 signal peptide" amino acids 18 to 19 (2 residues), see Phobius details transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 280 to 302 (23 residues), see Phobius details PF00672: HAMP" amino acids 302 to 353 (52 residues), 28.2 bits, see alignment 1.9e-10 PF00015: MCPsignal" amino acids 416 to 570 (155 residues), 186.1 bits, see alignment E=5e-59

Best Hits

KEGG orthology group: None (inferred from 95% identity to ddd:Dda3937_01632)

Predicted SEED Role

"Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)" in subsystem Bacterial Chemotaxis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385XZQ4 at UniProt or InterPro

Protein Sequence (652 amino acids)

>DZA65_RS11335 HAMP domain-containing protein (Dickeya dianthicola ME23)
MSVFGNYVRNLKISHKMYGGFGLVLLLVVLASAFSSVRFFMIQDLYVKSSIMNEMGNFID
LTRIARIKFTYTLNNDNLNNLNKYLEQARQLNEKANALRWDATYQSDFSNVAQDFTEYAK
NIDRVKNSVDGMNDVTKEIAALDQKEALSDVLYASSNDINLLRQYHQTTVFYAQLVDNVH
LLQKEGSDAAFKSMQGVYDQAKKSFDSLNGLLPAEAKNSVGELGSRIERYNQSGVKYNDK
VNQLRTTDSALRATGDKLISDIDGILKKIGARNNDIINNSVFQTIISGIAAAVLGLFIAW
SVTRQITRPVIANLKLAERIAGGDLSASVVVERHDELGQLTLAMMSMTEKLRQLIADIRH
SVYSVAKASSDIAAGNNDLSSRTEQQSSAIVETAASMEQLTATVKNNADNARHASQISEQ
ASGNANRGGEIIHKVIQTMDDISGSSKKISDITTVINSIAFQTNILALNAAVEAARAGEQ
GRGFAVVAGEVRNLAQRSSQAAKEIEGLISESVTRVNTGTVLVSDAGSAMDDIMASVKRV
HDIMGEIASASDEQSRGIAQIGAAVSEMDTTIQQNASMVHESSAASNSLEDEAAQLSRLV
SVFRLSSQDEPALPTRPRMADSRAQIADRSPRPAALPAGRSGSSSADNWTTF