Protein Info for DZA65_RS11265 in Dickeya dianthicola ME23

Annotation: virulence factor SrfB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 996 transmembrane" amino acids 822 to 839 (18 residues), see Phobius details PF07520: SrfB" amino acids 1 to 993 (993 residues), 1495.8 bits, see alignment E=0

Best Hits

KEGG orthology group: None (inferred from 98% identity to ddd:Dda3937_01646)

Predicted SEED Role

"SrfB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385XXH0 at UniProt or InterPro

Protein Sequence (996 amino acids)

>DZA65_RS11265 virulence factor SrfB (Dickeya dianthicola ME23)
MLATLTDYKQQITLIQNSGIQFLDFALKLPPARSSFANRFVRKSANGPLLRLTYNEHSGK
YTLPSAMQVLPEAVNPESSYTLEQSLRLLSNVWLPLPFFRFNPPRTFMGGPHNWARVQVL
ELGEPDDDGNTHRLCLAFDTRVYPESHDLEALAPSENDINAGRLFTLAYHSEELDDFLDQ
TWVDGWLREAFSQQALVVESRKPRDIRQHLREFEYQAHYLNLLDIMATLLDVPEIRITSG
TLKEPAINVDLILDVGNSHTAGVLVEDHADESNGLKQTYELQIRDLSQPHYLYNELFDSR
VEFAQARFGKQNFSFESGRDDAFVWPSITRVGREASRLALQRQGTEGSSGISSPRRYLWD
EEPYVPGWRFSQTSSPRQQEPLATAMPLTMLVNDEGQPLFSLPLDERLPVFDPHYSRSSV
MTFMLCELLAQALMQMNSAAQRLKMIHANAPRQLRNIILTLPSAMPKPEREIFRRRMIDA
IGLVWKAMGWHPADEDFLTAQDKRHSSVPVPEVQMEWDEATCGQMVYLYNEAQVNFGGRA
EAFFASMARPDKELADDEQPGKTLRIASIDIGGGTTDLAITQYWLDDGVGSNVKIIPRLL
FREGFKVAGDDILLDVIQLYVLPALQAALKKAGVTSPDSLMTRLFGSEGRMDGQLTLRQQ
VTLQMFIPIGQAILEAYEQFDPLDLNAEIDTAFGEMLPQAPTRNVLEYVNTEIQRELPDE
ETPFDILQVPLILRLGKLHSEFLANRMSITQHLRLMSEVVSLYACDVLLLTGRPSRFPGI
QALFRHLQPLPINRMMSLDGYHTSDWYPFNKRGRIENPKSTAAVGAMLCLLALDLRLPGF
YFKAGDFEPYSTVRYLGMLDSTNTLTADNVYYNDIDLDDADFTLDDQSGFEVRGSLCLGF
RQLDNERWPASPLYSLSIVDPELARKVAGDSVLHVRLKVVPGDDNLTPERVEIANAVLGS
GLAISPHQLRLKLNTLSSTVSGMAHYWIDSGSVFKK