Protein Info for DZA65_RS11060 in Dickeya dianthicola ME23

Annotation: rhamnogalacturonate lyase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 570 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF06045: Rhamnogal_lyase" amino acids 20 to 160 (141 residues), 30.4 bits, see alignment E=3.9e-11 PF14686: fn3_3" amino acids 341 to 396 (56 residues), 41.7 bits, see alignment 1.2e-14 PF14683: CBM-like" amino acids 413 to 567 (155 residues), 88.2 bits, see alignment E=8.9e-29

Best Hits

KEGG orthology group: None (inferred from 92% identity to dze:Dd1591_2152)

Predicted SEED Role

"rhamnogalacturonate lyase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385XXK1 at UniProt or InterPro

Protein Sequence (570 amino acids)

>DZA65_RS11060 rhamnogalacturonate lyase (Dickeya dianthicola ME23)
MQGRTYLIAVSILCSSLAQAASSSDVSMALSGMKAQIDNGLVSVAIGSDGSIGTLSNGSQ
NLIDKTNSQVNALGKSSTGYLDYYSGSFLKFKPQQISVIENSKNIVHVAYVDNETSTLSL
EYHFIVRRGVSGVYSYAVARNDTSSNLTVSELRGVYRFNPFLLDHISNGIHTTKPNLYSQ
LTNAEKIQDETWKLSDGSYYSKYDFAGYMRKTPVWGVYGNNVGAWIVPGSTEYFSGDDTK
QDLMVHQDGLAIMYMTGSHFGTPDLVAPPGWQKLYGPWLLYVNAGTDEQMYRDALTRSQQ
EMADWPYRWVNDSRFPVDRASVTGNVNTTQPLNVTLSSSLNEASDVQTLGYAFTANTDSQ
GNFRFDNVRKGKYTLTIYANGGTRPGVLYGDVVNVTDTTSLPAIHLSEAAPVLWAIGNSD
RLAAEFRFGCQLRNYHWQNDVPANLTYTVGQSSPAQDWYYAQTNPGSWNVNYIDRADGSG
RVLNVAFAAASNRGMTNPTTPSLSVLVNGTKVKDIRYDNDKSVYRGALTSGKYHYERISI
DSSLLRDGANTITFTLNGGTFMYDVMTLTK