Protein Info for DZA65_RS10875 in Dickeya dianthicola ME23

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 329 PF00005: ABC_tran" amino acids 31 to 189 (159 residues), 105.2 bits, see alignment E=6.9e-34 PF08352: oligo_HPY" amino acids 240 to 304 (65 residues), 80.6 bits, see alignment E=1.3e-26 TIGR01727: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain" amino acids 240 to 322 (83 residues), 85 bits, see alignment E=1.5e-28

Best Hits

Swiss-Prot: 86% identical to OPPD_ECOLI: Oligopeptide transport ATP-binding protein OppD (oppD) from Escherichia coli (strain K12)

KEGG orthology group: K02031, peptide/nickel transport system ATP-binding protein (inferred from 98% identity to ddd:Dda3937_04051)

MetaCyc: 86% identical to murein tripeptide ABC transporter / oligopeptide ABC transporter ATP binding subunit OppD (Escherichia coli K-12 substr. MG1655)
3.6.3.23-RXN [EC: 7.4.2.6]; 7.4.2.6 [EC: 7.4.2.6]

Predicted SEED Role

"Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.6

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4CCK2 at UniProt or InterPro

Protein Sequence (329 amino acids)

>DZA65_RS10875 ABC transporter ATP-binding protein (Dickeya dianthicola ME23)
MMNTSQSREALLDVKDLRVTFSTPDGDVTAVNDLNFSLSAGETLGIVGESGSGKSQTAFA
LMGLLATNGRIGGSARFNGREILNLPERELNRLRAEEIAMIFQDPMTSLNPYMRVGDQLM
EVLMQHKKLGKSEAFDESVRMLDAVKMPEARKRMRMYPHEFSGGMRQRVMIAMALLCRPK
LLIADEPTTALDVTVQAQIMTLLNDLKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTM
EYGSAREIFYEPTHPYSIGLLNAVPRLDEENEALATIPGNPPNLLRLPKGCPFLPRCPYA
QDRCQQAPELTPFGEGRLRACFRSVGELV