Protein Info for DZA65_RS10550 in Dickeya dianthicola ME23

Annotation: murein DD-endopeptidase MepM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 470 transmembrane" amino acids 21 to 39 (19 residues), see Phobius details PF08525: OapA_N" amino acids 12 to 39 (28 residues), 34.7 bits, see alignment (E = 3.2e-12) PF04225: OapA" amino acids 127 to 200 (74 residues), 32.2 bits, see alignment E=2.3e-11 PF01476: LysM" amino acids 129 to 172 (44 residues), 35 bits, see alignment 2.7e-12 PF19425: Csd3_N2" amino acids 210 to 331 (122 residues), 210.6 bits, see alignment E=1.3e-66 PF01551: Peptidase_M23" amino acids 343 to 437 (95 residues), 121.1 bits, see alignment E=4.5e-39

Best Hits

KEGG orthology group: None (inferred from 97% identity to ddd:Dda3937_01626)

Predicted SEED Role

"Cell wall endopeptidase, family M23/M37"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385XXS8 at UniProt or InterPro

Protein Sequence (470 amino acids)

>DZA65_RS10550 murein DD-endopeptidase MepM (Dickeya dianthicola ME23)
MQQIVRTIALAYNSLPRPHRVMLGSLTVVTLAVAVWRPMTYPPVNDAPVIVKDAESEKNQ
TQSQALNPPASEPLDSNPLPPIATSQIAGSAPTADVTEANSEPLDQPSTTSGIIKDELDD
KDADGTHEYVVSTGDTLSSILTQYGIDMSDIAALADRNAALRNLKIGQQLTWTLDSDGAL
QTLTWQASRRETRTYTRNGDAFREEIENVEGDWQNKVLIGRLDGSFASSAQAAGLTSSEV
REVIRALQWQLDFRKLRKDDSFAVLISREILDGRSEQSELQGVRLRTGGKNYYAFRAEDG
KFYDREASGLTRGFLRFPTMKQFKISSNFNPRRLNPVTGRIAPHRGVDFSMPVGTPVLAV
GDGEVVVAERDSEAGNFVAVRHGRQYTTRYMHMNRLLVKPGQRIKRGDRIGLSGNTGRST
GPHLHYELWVNQQAVNPLTAKLPRSEGLIGKDRRDYLAHVREVLPQLQLD