Protein Info for DZA65_RS10400 in Dickeya dianthicola ME23

Annotation: type VI secretion system tip protein VgrG

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 595 TIGR01646: Rhs element Vgr protein" amino acids 26 to 493 (468 residues), 164.5 bits, see alignment E=2.2e-52 PF05954: Phage_GPD" amino acids 66 to 334 (269 residues), 35.2 bits, see alignment E=7.6e-13 PF04717: Phage_base_V" amino acids 372 to 447 (76 residues), 68.5 bits, see alignment E=5.4e-23

Best Hits

KEGG orthology group: None (inferred from 45% identity to sur:STAUR_1549)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385XXW5 at UniProt or InterPro

Protein Sequence (595 amino acids)

>DZA65_RS10400 type VI secretion system tip protein VgrG (Dickeya dianthicola ME23)
MSGGATPGGVATYEITANGAAIPGDYQVCRIQIQQRINHISRATLDIQDGSASQENFTVS
ASSTFVPGAEIVINLGYDSTNNKVFSGIVTRQSLQVNPGAGPLLVVECRDSAIKMSVGRK
SAAYQNKTDSDVMSTLIGQYGLSKKVAGTTATLPELVQYYCSDWDFMLSRAEVNGLVVST
LNGTVSVFSPTANTRSALTVTYGAGLYHFSAGLNAVTQLAQVKASAWDDKSQQCISATAA
NALAGPGNLSSKTLSGVVGLADFALQTTAALDNDALTQWSNAQMLKSELAKITGEVRFQG
DAAVTAGNYLTISGMGDRFDGDYFVSGIEHDYADGNWFTCADLGLAPLWFVQEREVMAPS
AAGLLPGVEGLYNATVKQIDQDPDNAYRILVELPLFNDGGKGLWARLANFYSSSGVGAFF
LPEVGDEVIVGFLNQDPRFPIILGSLYSANRKPYSELTPNAENSQKAIVTKSELRIVFDD
KDSIMTITTKGNNVIVLDDKKQQISITDQHNNAITMSSSGIDINSPSSINIQADQKVNIK
GNLGVTVQASSGDVKVSGLNVNASADMAFNAKGSATAEVQGGAELTLKGGVVMIN