Protein Info for DZA65_RS10380 in Dickeya dianthicola ME23

Annotation: phage tail sheath family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 527 PF04984: Phage_sheath_1" amino acids 291 to 411 (121 residues), 36.2 bits, see alignment E=5.5e-13 PF17482: Phage_sheath_1C" amino acids 415 to 521 (107 residues), 52.7 bits, see alignment E=3.8e-18

Best Hits

KEGG orthology group: K06907, (no description) (inferred from 53% identity to sur:STAUR_1544)

Predicted SEED Role

"Phage tail sheath protein FI"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4D555 at UniProt or InterPro

Protein Sequence (527 amino acids)

>DZA65_RS10380 phage tail sheath family protein (Dickeya dianthicola ME23)
MLASNIKTPGVYINELNAFPNSVVPVATAVPAFIGYTPNAEYQGKSYYNKAQKITSFAEF
QAIYMKPNPAPPADPASQYNPEYYLVEQKSQPSTGESLLLNGSYYSIVPDPNTLYYLYNS
IRLFYQNGGGDAYIVSVGSYGAASGKAGDVGAPLVNPNVTLADLQRGLALLQNEQEPTIY
ICPEATLLSVDDNGTLMQSMLLQAEALQTAVCLFDIIGGNAPDPIMYTNDIETFRNSTGS
NGLNYGAAYYPFVGTTIMQNSDINFTNLFGGDIKQLASILNPPSAPNAVVAKIIGLIENP
PATNPMTNSQLNAALLNASQTYSQIINHVLTSANILPPSGAVAGVYTVNDNLNGVWHAPA
NTSIVGAAHLPIRLTDTQQADLNVNAVSGKSINAIRFFNGQGILIWGARTLDGNSQDWRY
VSVRRTMTFLEQSVKLAARAYVFEPNNANTWAAVRSEIISFLTSIWKEGGLQGASAADAF
QVLCGLGSTMTGDDLLNGFLNVTVRVAIVRPAEFLVITFEQEMAKSG