Protein Info for DZA65_RS10235 in Dickeya dianthicola ME23

Annotation: chromosome partition protein MukB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1479 PF04310: MukB" amino acids 2 to 227 (226 residues), 403 bits, see alignment E=8e-125 PF13555: AAA_29" amino acids 8 to 54 (47 residues), 31.7 bits, see alignment (E = 2.1e-11) PF16330: MukB_hinge" amino acids 645 to 810 (166 residues), 251.4 bits, see alignment E=7.3e-79 PF13558: SbcC_Walker_B" amino acids 1336 to 1424 (89 residues), 47.2 bits, see alignment 4.2e-16

Best Hits

Swiss-Prot: 81% identical to MUKB_CROS8: Chromosome partition protein MukB (mukB) from Cronobacter sakazakii (strain ATCC BAA-894)

KEGG orthology group: K03632, chromosome partition protein MukB (inferred from 96% identity to ddc:Dd586_2239)

Predicted SEED Role

"Chromosome partition protein MukB" in subsystem DNA structural proteins, bacterial or MukBEF Chromosome Condensation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385XXL7 at UniProt or InterPro

Protein Sequence (1479 amino acids)

>DZA65_RS10235 chromosome partition protein MukB (Dickeya dianthicola ME23)
MIERGKFRSLTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFITALIPDLTLLHF
RNTTEAGATSGSRDKGLHGKLRAGVCYSVLDVVNSRHQRVLVGVRLQQVAGRDRKVDIKP
FTIQGLPVAVSPTQILTQTVGERQARVLSLQEVKDRLDEYEGVQFKQFNSITDYHSLMFD
LGVVPRRLRSASDRSKFYRLIEASLYGGISSAITRSLRDYLLPENSGVRKAFQDMEAALR
ENRMTLEAIRVTQSDRDLFKHLISEATSYVAADYMRHANERRVHLDGALALRHELFASRK
QLMTEQTRHVEMARELQEQSGAESDLETDYQAASDHLNLVQTAMRQQEKIARYSADLEEL
SYRLEEQNEVVEEARDQLEENEARADAAEQEVDELKSQLADYQQALDVQQTRAIQYNQAQ
QALERARDLCQVPELTPDNADEWLDSFQAKEQEATELLLMLEQKLSVADAANSQFEQAYQ
LVCRIAGAISRSEAWEVARDLLRDSSSQRYLAEQVQPLRMRLSELEQRRREQQDAERLLQ
EFVKRSGQDYQPEDLDSLQQELEARIEDLSVRVSEAGEHRLALRQELEQIQQRITQLTAR
APVWLAAQEALTQLGEQSGENFADSQQVTEFMQQLLERERETTVERDSVAVRKQQVDGQI
ERLSQPGGSEDSRLNALAERFGGVLLSEIYDDVTLDDAPYFSALYGPARHAIVVADLSRV
REQLAGLDDCPEDLYLIEGDPQSFDDSVFEAEELEKAVVVKIADRQWRYSRFPEVPLFGR
AAREQRLEGLREEREQLAEQYATLSFDVQKIQRLHQAFSRFIGSHLAVVFESDPEAEMRQ
IGSRRGELERAISNFDNENQQQRQQYEQAKEQVGMLNRLIPRISLLCDDALVERVEALRE
ELDEAEDAARFMQQHGASLVKLEPLATVLQNDPQQHEQMREDYAHAQAAQRAAKQQAFAL
TEVVQRRAHFSYTDSAGMLNANADLNDKLRQRLEQAEQERTRAREQLRQQQAQLTQYSQL
QASLKSSSDAKRDMLKELTQELSDIGVRADADAEARARARRDELHAALSANRSRRNQLEK
QITFCEAEMDGLQKKLRKLDRDYHVMREQVVIAKAGWCAVMRLVKDNGVERRLHRRELAY
MSGDELRSMSDKALGALRQAVSDNEHLRDVLRMSEDPKRPERKVQFYIAVYQHLRERIRQ
DIIRTDDPVEAIEQMEIELNRLTEELTAREQTLAISSRSVANIIRKTIQREQNRIRMLNQ
GLQAVAFGQVKSVRLNVNVRETHTTLLNVLSEQQELHQDLFNSTRLTFSEALAKLYQRLN
PEIDMGQRTPQTIGEELLDYRNYLEMEVEVNRGADGWLRAESGALSTGEAIGTGMSILVM
VVQSWEEESSRLRGKDISPCRLLFLDEAARLDAKSIATLFELCERLEMQLIIAAPENISP
EKGTTYKLVRKVFQNHEHVHVVGLRGFGSEPVETTQQAS