Protein Info for DZA65_RS09765 in Dickeya dianthicola ME23

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 124 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 42 to 57 (16 residues), see Phobius details amino acids 65 to 84 (20 residues), see Phobius details amino acids 96 to 118 (23 residues), see Phobius details PF11045: YbjM" amino acids 4 to 119 (116 residues), 176 bits, see alignment E=1.6e-56

Best Hits

Swiss-Prot: 43% identical to YBJM_ECO57: Inner membrane protein YbjM (ybjM) from Escherichia coli O157:H7

KEGG orthology group: None (inferred from 96% identity to ddd:Dda3937_03483)

Predicted SEED Role

"Inner membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4CPW1 at UniProt or InterPro

Protein Sequence (124 amino acids)

>DZA65_RS09765 membrane protein (Dickeya dianthicola ME23)
MTGNNRGWLGVVSCFVLFTLVFLSQKMRIVGTSLEDGFRGDPGMLLFLLPGMVSSYLSRN
RRLHYPLIGALMAMPVCLLVLQLWQFSSLSFWQELAYVSSAVFWCLMGGLAFLCLRAVSR
HYFL