Protein Info for DZA65_RS09685 in Dickeya dianthicola ME23

Annotation: methyl-accepting chemotaxis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 553 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 192 to 213 (22 residues), see Phobius details PF02203: TarH" amino acids 3 to 169 (167 residues), 54.1 bits, see alignment E=1.9e-18 PF00015: MCPsignal" amino acids 327 to 482 (156 residues), 187 bits, see alignment E=2.8e-59

Best Hits

KEGG orthology group: None (inferred from 89% identity to ddd:Dda3937_03499)

Predicted SEED Role

"Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)" in subsystem Bacterial Chemotaxis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385XWL8 at UniProt or InterPro

Protein Sequence (553 amino acids)

>DZA65_RS09685 methyl-accepting chemotaxis protein (Dickeya dianthicola ME23)
MNFLKNITIRRMMLIILALFTVIWGITSIYTLNSFSSMNRLLDDTIDQKKNFSNLVKGND
QYFRSVTRMMRVVDYRQAGDADNAQKTLTSASTALKNSEEALAQFRRGGHIGVDGALANQ
MIDVWSRLLQNGMAPMLKAVNDGRNDDFQQLYRQQYMPLSVEFGDVANKYVNAVQSDETT
TVLKTHIAINQNVLLAALVIGVIVLFLSDRYLVNYLVTPIGQIKRHLELLTSGKLGVELD
EFGRNCAGQLIPYIRAMQHNLSNTVQTIHTSSSVIHTGTSEIRQGNDELSRRTDQQAAAL
QETAASMEELTSTVKNNADNVRQARQISDDAQRMARQGGDITGSVVSTMQSISDSSRKIA
DITSVINGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAKEIETLIS
ESVGRVNTGSELVREAGNAMEMIISSVSRVHDLMGEISAASDEQSRGIAQIGQAVTEMDG
VTQQNAALVEEASAAAASLEGQAQSLAAAVAAFELGDTPTALHSPRVHAPALKRPALKAS
LPARSSRGDWETF