Protein Info for DZA65_RS09530 in Dickeya dianthicola ME23

Annotation: microcin C ABC transporter permease YejB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 365 transmembrane" amino acids 9 to 29 (21 residues), see Phobius details amino acids 135 to 156 (22 residues), see Phobius details amino acids 168 to 196 (29 residues), see Phobius details amino acids 224 to 246 (23 residues), see Phobius details amino acids 282 to 308 (27 residues), see Phobius details amino acids 329 to 348 (20 residues), see Phobius details PF00528: BPD_transp_1" amino acids 152 to 359 (208 residues), 124.6 bits, see alignment E=2e-40

Best Hits

Swiss-Prot: 83% identical to YEJB_ECO57: Inner membrane ABC transporter permease protein YejB (yejB) from Escherichia coli O157:H7

KEGG orthology group: K13894, microcin C transport system permease protein (inferred from 99% identity to ddd:Dda3937_03827)

MetaCyc: 83% identical to putative oligopeptide ABC transporter membrane subunit YejB (Escherichia coli K-12 substr. MG1655)
3.6.3.23-RXN [EC: 7.4.2.6]

Predicted SEED Role

"Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.6

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4C5R6 at UniProt or InterPro

Protein Sequence (365 amino acids)

>DZA65_RS09530 microcin C ABC transporter permease YejB (Dickeya dianthicola ME23)
MGTYLLRRLLLVIPTLWAIITINFFIVQIAPGGPVDQAIASIEMGQGSGFSAGGDGGGGL
ARGPGGGKPSVENTYRGARGLDPEIIAEITKRYGFDKPLHERYFKLIWDYVRFDFGNSLF
RGSSVIALIKESMPVSISLGLWSTLIIYLVSIPLGIKKAVRNGSAFDVWSSTLIIVGYAI
PAFLFAILLIVLFAGGGYLDWFPLRGLVSPHFDILSWFDKVTDYLWHIALPVLAMVIGGF
ATLTMLTKNSFLDEIRKQYVVTARAKGLDEKRILYRHVFRNAMLLVIAGFPATFISMFFT
GSLLIEVMFSLNGLGLLGYDATLQRDYPVMFGTLYIFTLIGLLLNILSDMTYTLVDPRID
FEERQ