Protein Info for DZA65_RS09465 in Dickeya dianthicola ME23

Annotation: nucleoid-associated protein YejK

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 336 PF04245: NA37" amino acids 10 to 324 (315 residues), 372.4 bits, see alignment E=1.2e-115

Best Hits

Swiss-Prot: 87% identical to NDPA_PECAS: Nucleoid-associated protein ECA2747 (ECA2747) from Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)

KEGG orthology group: K06899, nucleoid-associated protein (inferred from 98% identity to ddd:Dda3937_04323)

Predicted SEED Role

"Nucleoid-associated protein NdpA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4CH95 at UniProt or InterPro

Protein Sequence (336 amino acids)

>DZA65_RS09465 nucleoid-associated protein YejK (Dickeya dianthicola ME23)
MSLDIDQIALHQLIKRDEQSLEMVLRDSLLTVNGAVSDMMAELHRVYSAKSKAYGLFNQE
SELATALRSCRKGDDDFLAFSRAATGRLRDELAKYPFAEGGVVLFCQYRYLAVEYLLIAV
LNSCNSLRVNEQLDISSTHYLDIHHADIVARIDLTEWETSPESTRYLTFLKGRVGRKVSD
FFMDFLAAAEGLDTKAQNKGLLKAVDDYCADAQLDKNERQQYRQQVYSYCNEQLQAGEEI
ELEALSKELPPLSDKTFQAFTAEQGYDLEESFPADRGTLRQLTKFAGSGGGLSINFDALL
LGERIFWDSATDTLTIKGTPPNLRDQLQRRLGGGNR