Protein Info for DZA65_RS09455 in Dickeya dianthicola ME23

Annotation: DUF3413 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 590 transmembrane" amino acids 21 to 39 (19 residues), see Phobius details amino acids 58 to 80 (23 residues), see Phobius details amino acids 88 to 111 (24 residues), see Phobius details amino acids 137 to 157 (21 residues), see Phobius details amino acids 169 to 190 (22 residues), see Phobius details PF11893: DUF3413" amino acids 7 to 251 (245 residues), 344 bits, see alignment E=4.1e-107 PF00884: Sulfatase" amino acids 260 to 505 (246 residues), 94.1 bits, see alignment E=1e-30

Best Hits

KEGG orthology group: K07014, (no description) (inferred from 97% identity to ddd:Dda3937_02189)

Predicted SEED Role

"FIG001881: hydrolase of alkaline phosphatase superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4C6K2 at UniProt or InterPro

Protein Sequence (590 amino acids)

>DZA65_RS09455 DUF3413 domain-containing protein (Dickeya dianthicola ME23)
MVTNRPRYREKVSQMISWGHWFALFNILLALGLSSRYLFVADWPSSLTGRVYSLVSWLGH
FSFIGFSAYLLIIFPLTFIVMSQRLLRFLSAALATTGQTLLIVDAAVFGRFHLHLNMTVW
ELVTNPDQSEMVRDGQLLFISVPVIFMVEMLFGTWCWQKLRSLSRRHFAKPLAAVFIVAF
CLSHLMYIWADANFYRPITMQRANLPLSYPMTARRFLEKHGLLNAQEYERRLTLQGNPDA
VSVEYPLSDISFRDAGSGYNLLLVVMDSVPSQDTPRTMPSLARFAEENVRFSNHFSAGTQ
QDGGLFNLFYGISTTYMDGVLGSSKPSALINALSRQGYQFGLFSASGFSSPLYRQALLSD
FSLPPAQPQSDEAITTQWTKWLDNNTDARSPWFSLIEFNHSEPGGNGRPVSANEQQRRYR
QDTASIDEQLDRIITTLREKNLLDKTVVVITAEQSSAERLKDSDPSPMNREHRQVPLVVH
WPDTPAQTISKMTDPKDVMTTLMQRLLHVKTATEDYSQGEDLFSAERRTNWLLNGDGNAL
TIITPQQVIVLRRNGNYRAYDASGRVLPNEKPQLGLLLQVLTTERRFIAN