Protein Info for DZA65_RS09330 in Dickeya dianthicola ME23

Annotation: ATP-binding cassette domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 325 PF00005: ABC_tran" amino acids 34 to 184 (151 residues), 116.6 bits, see alignment E=1.4e-37 TIGR01727: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain" amino acids 235 to 317 (83 residues), 64.2 bits, see alignment E=4.6e-22 PF08352: oligo_HPY" amino acids 236 to 298 (63 residues), 57.5 bits, see alignment E=1.5e-19

Best Hits

Swiss-Prot: 49% identical to APPF_BACSU: Oligopeptide transport ATP-binding protein AppF (appF) from Bacillus subtilis (strain 168)

KEGG orthology group: K02032, peptide/nickel transport system ATP-binding protein (inferred from 92% identity to ddd:Dda3937_01246)

Predicted SEED Role

"Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385XWE0 at UniProt or InterPro

Protein Sequence (325 amino acids)

>DZA65_RS09330 ATP-binding cassette domain-containing protein (Dickeya dianthicola ME23)
MPSNRPPLLRIRELKKYYAVRRGWRKQGEPVRALDGVSFDIWPGETYGLVGESGCGKSTL
GRSLLRLVEITAGEIHFDGELISALPEAALKPFRRRVQAIFQDPYSSLNPGMTVAQLIAE
PMRIHGYARDERQTRTLALLERVGLKAEHLQRFPHEFSGGQRQRISIARALSVNPQFVVC
DEPLSALDVSVQAQVVNLLQDLQQERGLTYLFIAHDLSMVRHISDRIGVMYQGRLVEEAP
AEQLYLHPAHPYTHMLLASIPIPDPRAPAPDEPVAAEAAPAMTGCSFYARCNLASEQCRA
AVPPLRDIDARHRVACWHVGMRNDR