Protein Info for DZA65_RS09315 in Dickeya dianthicola ME23

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 323 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details transmembrane" amino acids 99 to 122 (24 residues), see Phobius details amino acids 134 to 159 (26 residues), see Phobius details amino acids 179 to 196 (18 residues), see Phobius details amino acids 237 to 259 (23 residues), see Phobius details amino acids 281 to 305 (25 residues), see Phobius details PF19300: BPD_transp_1_N" amino acids 2 to 101 (100 residues), 52 bits, see alignment E=7.9e-18 PF00528: BPD_transp_1" amino acids 114 to 314 (201 residues), 150.2 bits, see alignment E=5.7e-48

Best Hits

Swiss-Prot: 40% identical to APPB_BACSU: Oligopeptide transport system permease protein AppB (appB) from Bacillus subtilis (strain 168)

KEGG orthology group: K02033, peptide/nickel transport system permease protein (inferred from 96% identity to ddd:Dda3937_03439)

MetaCyc: 40% identical to glutathione ABC transporter membrane subunit GsiC (Escherichia coli K-12 substr. MG1655)
RXN0-11 [EC: 7.4.2.10]

Predicted SEED Role

"Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.10

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4C6N7 at UniProt or InterPro

Protein Sequence (323 amino acids)

>DZA65_RS09315 ABC transporter permease (Dickeya dianthicola ME23)
MNNIVVRRFGQLLPMLFFISLVSFLLVKLAPGDPVQAYITPRMSLDDIKRVRHSLGLDQP
LAMQYLLWLKNVLQGDLGYSLISHRPVLTLIVERLPATLGLMGASLLLAVAIAMPLGLLA
GAFRHRWLDHLLNLVAYIGISVPIFWFGILLIIIFSVQLNWLPSMGMRTVGAADSWLDVV
RHGVLPCVALTFYNLSHYVRYIRSHTITQLSADYVQTQLAYGATRAHILFRHVLKNVMLP
VITLFGLSFSELVVGAYVTESVFSWPGMGLLGLQSITSLDYPLIMAMVMLSACMLVVGNL
LADVLYRVADPRIKAIPHIKARR