Protein Info for DZA65_RS08995 in Dickeya dianthicola ME23
Annotation: uridine diphosphate-N-acetylglucosamine-binding protein YvcK
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 73% identical to GNGF_YERPE: Putative gluconeogenesis factor (YPO1158) from Yersinia pestis
KEGG orthology group: None (inferred from 96% identity to ddd:Dda3937_03755)Predicted SEED Role
"FIG002813: LPPG:FO 2-phospho-L-lactate transferase like, CofD-like"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A3A4C426 at UniProt or InterPro
Protein Sequence (319 amino acids)
>DZA65_RS08995 uridine diphosphate-N-acetylglucosamine-binding protein YvcK (Dickeya dianthicola ME23) MGNRTLAELDRVVALGGGHGLGRVMSSLSFLGPRLTGIVTTTDNGGSTGRIRRSEGGIAW GDTRNCLNQLITAPSMASAMFEYRFSGNGELSGHNLGNLMLKAMDHLSVRPLEAINLIRN LLKVDALLIPMSEQPVDLMAIDALGNPVYGEVAVDQLAALPQDLMLYPTAPATQEALTAI AEADLILIGPGSFLTSLMPPLLLTDLAQSLHHAHAPVVYIGNLGDEQSQIATRLTLAQKL QLIESKIDRRIIDAVVVAPRTDTRGVDDRLIIQQPLGAQDVPHHHDRVLLRAALELAAQA LGLCPAGVDTSQARSSTQQ