Protein Info for DZA65_RS08705 in Dickeya dianthicola ME23

Annotation: ABC transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 293 transmembrane" amino acids 14 to 36 (23 residues), see Phobius details amino acids 79 to 103 (25 residues), see Phobius details amino acids 114 to 135 (22 residues), see Phobius details amino acids 139 to 157 (19 residues), see Phobius details amino acids 194 to 219 (26 residues), see Phobius details amino acids 246 to 266 (21 residues), see Phobius details PF12911: OppC_N" amino acids 9 to 50 (42 residues), 26.6 bits, see alignment 4.4e-10 PF00528: BPD_transp_1" amino acids 93 to 274 (182 residues), 98.1 bits, see alignment E=5.3e-32

Best Hits

Swiss-Prot: 38% identical to CNTC_STAAM: Metal-staphylopine import system permease protein CntC (cntC) from Staphylococcus aureus (strain Mu50 / ATCC 700699)

KEGG orthology group: K02034, peptide/nickel transport system permease protein (inferred from 93% identity to ddd:Dda3937_00760)

Predicted SEED Role

"Nickel transport system permease protein NikC (TC 3.A.1.5.3)" in subsystem Transport of Nickel and Cobalt (TC 3.A.1.5.3)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4CH72 at UniProt or InterPro

Protein Sequence (293 amino acids)

>DZA65_RS08705 ABC transporter permease subunit (Dickeya dianthicola ME23)
MAWAIGKKITQDRLALLCCLLLLMVLIFGVFAPYIAPHDPALTSVRHKYQGASLLYPLGT
DNLGRCVFSRLVFGVRTTVFYSVAAMMLTVLAGAIVGLIAGYFKGRVDGLLMRVCDAMLS
FPGEVMIFAIVGIIGPGMQNILLAVVLAKWAWYARMVRGMALRYGSKNYVNYARVIAAPS
AYVMRRHLLPAAAAELVILASADIGSVILMISALSFLGLGAQPPLPEWGNMLSEAKDVML
THPTQMLPAGIAIAVVVAACHVVGDFLRDALDPAAYAGRDAYAGRDAYASSEK