Protein Info for DZA65_RS08425 in Dickeya dianthicola ME23
Annotation: malonate decarboxylase acyl carrier protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 76% identical to MDCC_KLEPN: Malonate decarboxylase acyl carrier protein (mdcC) from Klebsiella pneumoniae
KEGG orthology group: K13931, malonate decarboxylase delta subunit (inferred from 97% identity to ddd:Dda3937_00366)MetaCyc: 76% identical to malonate decarboxylase [acyl carrier protein] component (Klebsiella pneumoniae)
Biotin-independent malonate decarboxylase. [EC: 4.1.1.88]
Predicted SEED Role
"Malonate decarboxylase delta subunit" in subsystem Malonate decarboxylase
Isozymes
Compare fitness of predicted isozymes for: 4.1.1.88
Use Curated BLAST to search for 4.1.1.88
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A3A4CTS6 at UniProt or InterPro
Protein Sequence (99 amino acids)
>DZA65_RS08425 malonate decarboxylase acyl carrier protein (Dickeya dianthicola ME23) MEHITLSFPATRTASGNALAGVVGSGDMEVLLTANAGQTLTIDITTSVDNSRARWQALFD RLRSLGGLPAGAMTIHDFGATPGVARIRIEQVFEGVNHA