Protein Info for DZA65_RS08250 in Dickeya dianthicola ME23

Annotation: efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1016 transmembrane" amino acids 16 to 33 (18 residues), see Phobius details amino acids 283 to 302 (20 residues), see Phobius details amino acids 336 to 356 (21 residues), see Phobius details amino acids 362 to 383 (22 residues), see Phobius details amino acids 389 to 408 (20 residues), see Phobius details amino acids 429 to 450 (22 residues), see Phobius details amino acids 461 to 491 (31 residues), see Phobius details amino acids 522 to 542 (21 residues), see Phobius details amino acids 856 to 874 (19 residues), see Phobius details amino acids 881 to 901 (21 residues), see Phobius details amino acids 907 to 930 (24 residues), see Phobius details amino acids 957 to 976 (20 residues), see Phobius details amino acids 982 to 1007 (26 residues), see Phobius details PF00873: ACR_tran" amino acids 7 to 1004 (998 residues), 527.2 bits, see alignment E=4e-162

Best Hits

KEGG orthology group: None (inferred from 71% identity to avi:Avi_1308)

Predicted SEED Role

"RND efflux transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4DS48 at UniProt or InterPro

Protein Sequence (1016 amino acids)

>DZA65_RS08250 efflux RND transporter permease subunit (Dickeya dianthicola ME23)
MNKFNLSDWALEHRSLVWYFIIISAVIGFFSYQELGREEDPAFTIKTMVIQAQWPGATAE
EMTNQVTDRIEKKLQEIDTLDHTRSQTTAGQTIIFVDLKEDTPSKEVRAVWQRVRNMMAD
IQGNFPVGIQGPFLNDRFDDVFGNIYAFTRDGISQRQLRDYVNDVQKKVLTIPNVGRVEI
LGAQDEVIYLEFNPRKSAELGVSRSDVIAALQAQNAVTASGFMEAGSDRIALRVDGGFAS
EQSLRHINLRINNRFFPLTDVVNITRGYVDPPTSLFRYDGKPAIALAVGIKSGSNLLVFG
HALDRTIDHIMHDLPAGVSVSKVSDQPAIVDEAVSGFTRALFEAVVIVLAISFISLGVRA
GLVVAISIPLVLAITFLVMYYSGISLQRISLGALIIALGLLVDDAMIATEMMVARLEMGD
SLRKAATHVYTSTAFPMLTGTLVTVASFIPVGFNASNAGEFLFTLFVVIAVSLIVSWVVA
VLIAPLLGVALLPKTITKQAEHQSRTDHAFSRMLQYCLRHRWLTIGSACAAFIVSVLCMS
LVQHQFFPSSDRPELIVDWNLPQNGSIEETSRQMAQFEQEKLQNNPDVDHWSSYIGTGAP
RFILSFDVQPSSVSLGQMVIVAKDIKTRDRLQKEYRAYLAHTFPGTDAYVKLLDVGPPVG
KPVQYRVAGPDIQTVRTEAHKLAAVIGQNPSLTNLAFDWNEPARVVKVNVLQDKARQMGV
SSQAIAQALNGLTGGEVVTQVRDDIYLINVLWRGQAKDRGSVDALLDLQLDGNNGRQVPL
SSVATFSYQLEQPTIWRRDRAAAITLKAGVSGDIQPATIVQALEPNVEVLRQSLPQGYTI
ETGGAVEESAKAQAPIVKVVPVMLFVIATILMIQLQSFHRLFLVFSVAPLALIGVVAALL
LSHAPLGFVAILGVLALVGILIRNSVILVVHIDTLRAEGISPWQAVVQATEHRMRPIMLT
AAAATLALIPIAREIFWGPMAYAMMGGIIVGTVLTLLFLPALYVTWFNIPREEPMK