Protein Info for DZA65_RS08055 in Dickeya dianthicola ME23

Annotation: type I-C CRISPR-associated protein Cas8c/Csd1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 580 TIGR01863: CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG" amino acids 3 to 573 (571 residues), 533 bits, see alignment E=4.7e-164 PF09709: Cas_Csd1" amino acids 6 to 569 (564 residues), 600.5 bits, see alignment E=1.8e-184

Best Hits

KEGG orthology group: None (inferred from 94% identity to ddd:Dda3937_02859)

Predicted SEED Role

"CRISPR-associated protein, Csd1 family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385XVQ6 at UniProt or InterPro

Protein Sequence (580 amino acids)

>DZA65_RS08055 type I-C CRISPR-associated protein Cas8c/Csd1 (Dickeya dianthicola ME23)
MILHALCQYYQRRQTEPDSALPAFGFEQKAIPFVIVIASDGRFLQFEDTRYLDEAQGKKP
QARLFTVAKSIKKTSGVAANLLWDPADYVLGIDKKGNPTRTEQQKTCFIDRIRALATFAP
QDSGLQAVLAFYQRYPGLPQPELEQDPLWVEINDANPLLTFRLVTDADCLVFQRPAVLAA
YQHVLADSDEPTGRCLVSGASLPVATLHPSIKGVWGAQSSGASLVSFNLDAFRSFGKEQG
ANAPISEQAAFEYTTALNALLQTHSPNRLQLGETSVVCWASQAHPLESWLPTLFGNSDDP
DNGVRTVTALFDSVHNGAYCADDGEARFYLLGLSPNAARVAIRFFQEGTVAQFAERLREW
FGDIDIIKPKAVTYPFPPLKALLRACALLNKEENLSPLLAGTTVRAILSGQPLPVALMSA
LLQRIKAERGDVSYYRASLMKACLNRAFRRQSIKEVSVSLDPEEQRIGYRLGRLFAMLEQ
IQHAANPTINATLCDRYYSSASSTPVAVFHTLMRLHTHHLKKLKIPAQIRYQKCIGEIID
GITDFPAHLNQEQQGLFAIGYYHQRQHFFSQSTSSQGDEQ