Protein Info for DZA65_RS07935 in Dickeya dianthicola ME23

Annotation: LysE family translocator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 214 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 40 to 65 (26 residues), see Phobius details amino acids 70 to 91 (22 residues), see Phobius details amino acids 130 to 148 (19 residues), see Phobius details amino acids 153 to 178 (26 residues), see Phobius details amino acids 189 to 208 (20 residues), see Phobius details PF01810: LysE" amino acids 15 to 209 (195 residues), 93.5 bits, see alignment E=6.3e-31

Best Hits

KEGG orthology group: None (inferred from 34% identity to sro:Sros_1558)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4D2Y4 at UniProt or InterPro

Protein Sequence (214 amino acids)

>DZA65_RS07935 LysE family translocator (Dickeya dianthicola ME23)
MEQTSLIAFAFAALLLNLSPGPSLFFVSARGMSQGKAAGAVSALGLASGSSIHALLAGLG
VTAIVAKSTFIANAVALIGGGYILYLGWGALKAARYTGENNGTQTASPPKNSLLKLYLQA
VSVEFLNPKTILFYLSILPGLILTGGYTPMQALLVSLIVPATALPIDMTAGLTGGMLARA
SQNNRVMSVALNYISGGALIFIGVILLYKNFMTN