Protein Info for DZA65_RS07310 in Dickeya dianthicola ME23

Annotation: SgcJ/EcaC family oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 134 TIGR02246: conserved hypothetical protein" amino acids 8 to 127 (120 residues), 39.1 bits, see alignment E=3.3e-14 PF13474: SnoaL_3" amino acids 12 to 91 (80 residues), 25.4 bits, see alignment E=2.3e-09 PF14534: DUF4440" amino acids 13 to 123 (111 residues), 31 bits, see alignment E=4.5e-11 PF12680: SnoaL_2" amino acids 18 to 106 (89 residues), 40.5 bits, see alignment E=5.3e-14

Best Hits

KEGG orthology group: None (inferred from 90% identity to ddd:Dda3937_03128)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4D8Y9 at UniProt or InterPro

Protein Sequence (134 amino acids)

>DZA65_RS07310 SgcJ/EcaC family oxidoreductase (Dickeya dianthicola ME23)
MSKTFNEERAAIEAAAVSYLTAFNRADITAVIATYTDDGVLMGPGRPAAVGKDELAVVYH
HVFETAGFDMAYEIKEVEQISPDWAFVRSATKGTETDKTTGVATPAAYQELFLLRKSATG
SWQTARYCTSKIRP