Protein Info for DZA65_RS07245 in Dickeya dianthicola ME23

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 284 transmembrane" amino acids 23 to 45 (23 residues), see Phobius details amino acids 89 to 112 (24 residues), see Phobius details amino acids 122 to 142 (21 residues), see Phobius details amino acids 148 to 166 (19 residues), see Phobius details amino acids 205 to 228 (24 residues), see Phobius details amino acids 250 to 273 (24 residues), see Phobius details PF12911: OppC_N" amino acids 21 to 61 (41 residues), 33.8 bits, see alignment 2.5e-12 PF00528: BPD_transp_1" amino acids 102 to 281 (180 residues), 101.4 bits, see alignment E=5.3e-33

Best Hits

Swiss-Prot: 42% identical to DDPC_ECOLI: Probable D,D-dipeptide transport system permease protein DdpC (ddpC) from Escherichia coli (strain K12)

KEGG orthology group: K02034, peptide/nickel transport system permease protein (inferred from 95% identity to ddd:Dda3937_00838)

Predicted SEED Role

"Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4D6S8 at UniProt or InterPro

Protein Sequence (284 amino acids)

>DZA65_RS07245 ABC transporter permease (Dickeya dianthicola ME23)
MSRAAFAVFARFTPARWRPRQPALLAGMTILLCWVLVALLAPWVAPFDPIAQDPSASLQP
PGGVHPFGTDNYGRDIFSRVMWASRIDLQISLLGVVFPFCIGTLLGALSGYLGGLTDTLV
MRVIDVVLAFPFLVLMLAIIAVLGPGLLSFYIAMAMVGWVSYARLVRAQVLTLRQRDYIL
AARSLGYSHWRVLFIHLLPNALTSSLVFSMSDCVLVLLSGAAISYLGLGVQPPLAEWGVM
VAEGQSFITTAWWMTTFPGLAIVLLAMGFSLLADGLGERLGARP