Protein Info for DZA65_RS07235 in Dickeya dianthicola ME23

Annotation: LuxR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 283 PF03472: Autoind_bind" amino acids 56 to 206 (151 residues), 75.8 bits, see alignment E=3.8e-25 PF08281: Sigma70_r4_2" amino acids 220 to 265 (46 residues), 31.6 bits, see alignment 1.5e-11 PF00196: GerE" amino acids 222 to 277 (56 residues), 62.5 bits, see alignment E=3.5e-21

Best Hits

KEGG orthology group: None (inferred from 90% identity to ddd:Dda3937_00840)

Predicted SEED Role

"Transcriptional regulator ahyR/asaR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385XYR8 at UniProt or InterPro

Protein Sequence (283 amino acids)

>DZA65_RS07235 LuxR family transcriptional regulator (Dickeya dianthicola ME23)
MGRTDVSEKAAVSGEFAVSEKAAAVRNAALRGETTARLAVHDSDHRRAAAFESAFGQLYD
DVRQLGFDALIYDYTPVPLSLEGDLITPSLLRTRNVPDDMVSLWCQSGYYQVDPVQIHAL
GSCAPFTWSYCRPENTSLHRVLNEQHRPVSHYMQNHNMRCGVTVPLHLPKGGFVTVTAIH
TGLDTDNEIETVLARMGLLTHTFQEHVFPLFDQAWHHCRHMHLSPREQECLAWSAEGLTA
KEIARKLHRSLATVNLHLNNAARKLGASNRVQAVVRAMHYRLL