Protein Info for DZA65_RS07075 in Dickeya dianthicola ME23

Annotation: TerC family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 529 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details amino acids 47 to 69 (23 residues), see Phobius details amino acids 85 to 103 (19 residues), see Phobius details amino acids 125 to 148 (24 residues), see Phobius details amino acids 154 to 172 (19 residues), see Phobius details amino acids 183 to 202 (20 residues), see Phobius details amino acids 213 to 231 (19 residues), see Phobius details PF03741: TerC" amino acids 15 to 203 (189 residues), 165.7 bits, see alignment E=1.4e-52 PF00571: CBS" amino acids 375 to 425 (51 residues), 27.8 bits, see alignment 4e-10 PF03471: CorC_HlyC" amino acids 443 to 519 (77 residues), 58.2 bits, see alignment E=9.9e-20

Best Hits

Swiss-Prot: 71% identical to YEGH_ECOLI: UPF0053 protein YegH (yegH) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 97% identity to ddd:Dda3937_03930)

Predicted SEED Role

"Putative capsular polysaccharide transport protein YegH"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4C8U6 at UniProt or InterPro

Protein Sequence (529 amino acids)

>DZA65_RS07075 TerC family protein (Dickeya dianthicola ME23)
MEWIADPTMWAGLATLVVLELVLGIDNLVFIAILAEKLPEKSRDRARVVGLLLALLMRFV
LLSSISWLVSLTHPLFTVYGHRFSARDLIMLIGGLFLLFKATMELNERLEGKDQAPQTQR
KGARFWPVVAQIVVLDAVFSLDSVITAVGMTEHLPVMMAAVTIAIGLMLLASKPLTRFVN
AHPTIVILCLSFLLMIGFSLVVDTFGYPIPKGYLYAAIGFSVMIEMLNQLAQFNRRRFLS
SSTPLRQRTAEAVLRLLRGEHEEAERDKQAADRVADNTGSTGQPVFNQQEQRMIERVLGM
SQRSVSSIMTIRHDIEHVDVNIDPADFHELMEKNQHTRLVMFDSHVSSEPLGVLHVIDLL
RQQLHGQALNLRALIRQPLVFPEQLSLLSALEQFREAHTHFAFVADEFGSVEGIVTLSDV
METIAGNLPLEGEELDARHDIQENEDGTLTANGYLPVEDLLMYIPLQLNEKREYHTLAGL
LMEYAQKIPQEGDEVRIDNSLFRVLIVESHRIVKVLIIPEPDPQPDYEV