Protein Info for DZA65_RS06885 in Dickeya dianthicola ME23

Annotation: cyd operon protein YbgE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 97 transmembrane" amino acids 17 to 37 (21 residues), see Phobius details amino acids 47 to 67 (21 residues), see Phobius details amino acids 77 to 96 (20 residues), see Phobius details TIGR02112: cyd operon protein YbgE" amino acids 5 to 97 (93 residues), 126.9 bits, see alignment E=1.8e-41 PF09600: Cyd_oper_YbgE" amino acids 17 to 94 (78 residues), 111.5 bits, see alignment E=1e-36

Best Hits

Swiss-Prot: 58% identical to YBGE_ECOLI: Uncharacterized protein YbgE (ybgE) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 98% identity to ddd:Dda3937_01881)

Predicted SEED Role

"Cyd operon protein YbgE"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4CKP6 at UniProt or InterPro

Protein Sequence (97 amino acids)

>DZA65_RS06885 cyd operon protein YbgE (Dickeya dianthicola ME23)
MIAFIDRLYRCMDKGPLRALSLIMALLLAGCVFWEPARFAARTSSLVVWQGMALIWAVCT
GVVHGVGFRPQRMRWRAFFSPFPAFVILAAGLYYYFL