Protein Info for DZA65_RS06140 in Dickeya dianthicola ME23

Annotation: prephenate dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 177 PF07445: PriC" amino acids 10 to 174 (165 residues), 185.8 bits, see alignment E=3.3e-59

Best Hits

KEGG orthology group: K04067, primosomal replication protein N'' (inferred from 96% identity to ddd:Dda3937_03295)

Predicted SEED Role

"Primosomal replication protein N prime prime" in subsystem DNA-replication

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4CMJ4 at UniProt or InterPro

Protein Sequence (177 amino acids)

>DZA65_RS06140 prephenate dehydrogenase (Dickeya dianthicola ME23)
METQALLAVLTRQIDTLARDVEPIAARQAPRSRFDRQLFSCYGTRLGDYLDEVRHNYQHL
QQYVQEQRQDRVAFMAEKLLAQMTALQRELATQPLREHEPATPAPQDRYQKLAEYQGYER
RLLAMIQDRESLLATQNQLSEQQRLQRELAALEGRLARCRQALSRLERQIERQEQGF