Protein Info for DZA65_RS05800 in Dickeya dianthicola ME23

Annotation: AAA family ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1227 PF13476: AAA_23" amino acids 5 to 209 (205 residues), 93.1 bits, see alignment E=7.7e-30 PF13558: SbcC_Walker_B" amino acids 1113 to 1181 (69 residues), 48.2 bits, see alignment 2.2e-16

Best Hits

KEGG orthology group: K03546, exonuclease SbcC (inferred from 94% identity to ddd:Dda3937_01937)

Predicted SEED Role

"Exonuclease SbcC" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385XV74 at UniProt or InterPro

Protein Sequence (1227 amino acids)

>DZA65_RS05800 AAA family ATPase (Dickeya dianthicola ME23)
MKILSLRLKNLNSLQGEWKIDFTREPFASNGLFAITGPTGAGKTTLLDAICLALYHQTPR
LKVGPSQNELMTRHTAECLAEVEFEVKNVAYRAFWSQRRAHNSPEGNLQPPKVELALCAD
GKILTDKVNDKLTMTADITGLDFDRFTKSMMLSQGQFAAFLNADANQRAELLEELTGTDI
YGQISERVFEKHKDAQNQLETLRAQVATLELLSDEQRQALEQQLDAIRQQEQSLSLHREE
VLGHQRWYDTLLQHQQAQQQAQQQCAAQEQVQQQSQPQLDKLQRSEPAEKLRPRFDERER
ALREKQRLTQQLNSARQQIDRQQDALNLLKVQLEKALSTRQQHAEHRQQQETLINERILP
LDHHIATQQAQRAQQQQALDSLLELQKTLIAGLTKLQRQQEQTRQQLAEIETYRRQHSRH
QHLGSHIPLWQAQFPQQQKWQQDLQVLQEKTAQQQIQAEYLDQQHASLAEKHQAQQSACE
RARQLLTEHLQQDEQLEAEQPLADLRQQLAQRMAERPDRQQLATSVAVLQQLISQRTLLE
AQQLDTQRRIQALEDQQTQQRQDYQRQADHLTDLDKRHELELHIVSLERERRQLQPGKEC
PLCGSPHHPAVERYQALRPSETQLRLHALRQEVDALKAGVVQTETQLQLQKQHRQQQQNA
LDGVRRDDASLRLQCQSVSKRLLVDFDPLQLPALHQWIEESDAREQSLQAQIASRERNQR
HIQESKDLLTSAQQLLAQTVQQLELNTQQQTSLHASREELRLLLEKTERELQRLHDSLRQ
TLETFDLTAPTLAQQEDWLRQRQTEWLRWQESEHEQHQCQPQLAALEAEIIASRQRQEET
DAAIKTYQQQLADTQRTLEQAQQQRWQLMGNQAVNDVLKQLRHVSQALELENQQAQQQWQ
QSQSQQSRLSGEIDSLEQQNQHAETTLQQLQAQFGEALAAAGFDDEAAFRHALLEEAERQ
QLLTLKERLSQRRQQVEALLQQANSTLEQHMATRPESMPEGISDWDIRQLISGLGDMVKA
EAAHQGELRQQLASDQQRRDKQRLLLEAIARGQQQCDDWGYLNQLIGSQKGDKFRRFAQG
LTLDHLVFLANRQLSRLHGRYLLQRKASDTLELQVADTWQADAVRDTRTLSGGESFLVSL
ALALALSDLVSTKTRIDSLFLDEGFGTLDGETLDTALDVLDNLNASGKSIGVISHVEAMK
DRIQVQIRVRKRNGLGVSQLDSAYAVK