Protein Info for DZA65_RS05305 in Dickeya dianthicola ME23

Annotation: prolipoprotein diacylglyceryl transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 287 transmembrane" amino acids 23 to 41 (19 residues), see Phobius details amino acids 61 to 82 (22 residues), see Phobius details amino acids 99 to 117 (19 residues), see Phobius details amino acids 129 to 147 (19 residues), see Phobius details amino acids 200 to 218 (19 residues), see Phobius details amino acids 225 to 245 (21 residues), see Phobius details amino acids 254 to 280 (27 residues), see Phobius details TIGR00544: prolipoprotein diacylglyceryl transferase" amino acids 1 to 284 (284 residues), 342.9 bits, see alignment E=7e-107 PF01790: LGT" amino acids 13 to 278 (266 residues), 269.4 bits, see alignment E=1.3e-84

Best Hits

Swiss-Prot: 87% identical to LGT_PECCP: Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase (lgt) from Pectobacterium carotovorum subsp. carotovorum (strain PC1)

KEGG orthology group: K13292, phosphatidylglycerol:prolipoprotein diacylglycerol transferase [EC: 2.-.-.-] (inferred from 98% identity to ddd:Dda3937_00850)

MetaCyc: 79% identical to phosphatidylglycerol--prolipoprotein diacylglyceryl transferase (Escherichia coli K-12 substr. MG1655)
RXN0-20 [EC: 2.5.1.145]

Predicted SEED Role

"Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)" (EC 2.4.99.-)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.-.-.-

Use Curated BLAST to search for 2.-.-.- or 2.4.99.- or 2.5.1.145

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385XU56 at UniProt or InterPro

Protein Sequence (287 amino acids)

>DZA65_RS05305 prolipoprotein diacylglyceryl transferase (Dickeya dianthicola ME23)
MTTSYLVFPQFDPVIFSLGPVSLHWYGLMYLVGFVFAMWLAVRRANKPGSGWHKEEVENL
LYFGFLGVFVGGRLGYVLFYAFPAFLDNPLYLFRVWDGGMSFHGGLLGVITVMLWFAHRT
KRHFFQVSDFIAPLIPFGLGAGRLGNFINGELWGRVTTDAPWAMLFPSSRGEDMALAAGN
PQWQAIFNQYGVLPRHPSQLYELVLEGVVLFIILNVFIRKARPMGSVSGLFLIGYGSFRI
IVEFFRQPDAQLGLFSGISMGQILSVPMVLAGILMMVWAYRRQSARQ