Protein Info for DZA65_RS05210 in Dickeya dianthicola ME23

Annotation: DNA-binding domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 502 TIGR03760: integrating conjugative element relaxase, PFGI-1 class" amino acids 32 to 241 (210 residues), 192.1 bits, see alignment E=5.2e-61 PF07514: TraI_2" amino acids 36 to 298 (263 residues), 81.3 bits, see alignment E=6.5e-27 PF07515: TraI_2_C" amino acids 381 to 487 (107 residues), 47.6 bits, see alignment E=1.7e-16

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4CPG9 at UniProt or InterPro

Protein Sequence (502 amino acids)

>DZA65_RS05210 DNA-binding domain-containing protein (Dickeya dianthicola ME23)
MLGWLKKQVSGLSPRGNIITPGVSAGETVSAEGWILPCSADELLASAGRPRLMQALWENC
PLSASMFESLWLSPLRQVAELAQSLPLPIASGEYGRRGGLLDAVLSVSVCAVRLSKSHLL
PPGAPPEEQAAQSSAWCTAIYYAALFSLVGELSSVRGETRNGKPWLPALTPPNDVYRFRL
ESGASTSHYWRLMIAGRLLPQPALIWLSQWPSVLQTLLSSLDEQAGGMVSVIVGNAWERC
GLSGGNATTPPIAASMNTSISQNTEIHSLEHQVSIAIESEIKKQNNNYNNKPGDNQVADN
MAVSATQEPGVPMSISPDELVSALHSPESAEDSDQQQQDTASGDADIDTLSILDRQLFSA
AEDKESISGNEPTGEHGEKQYGHLFFEWIVEGVNSDSISVNERDGFTHVVSQFLFLKTPE
CFFKYLSSSGVDIDKSALQQSFEASSYHHTRGGKGIYTYRIYDNQERAGKYEKIAGYMIP
ITALSKCKNRLVNSSPYVSPNN