Protein Info for DZA65_RS05045 in Dickeya dianthicola ME23

Annotation: conjugative transfer ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 939 TIGR03744: conjugative transfer ATPase, PFL_4706 family" amino acids 38 to 930 (893 residues), 1403 bits, see alignment E=0 PF11130: TraC_F_IV" amino acids 49 to 313 (265 residues), 180.5 bits, see alignment E=3.8e-57

Best Hits

KEGG orthology group: None (inferred from 79% identity to pwa:Pecwa_0662)

Predicted SEED Role

"Type IV secretory pathway, VirB4 components"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4CYC9 at UniProt or InterPro

Protein Sequence (939 amino acids)

>DZA65_RS05045 conjugative transfer ATPase (Dickeya dianthicola ME23)
MFSLFRSKVNVRPQYQEGDGPFAVAGREPLHRDGTLTHRDEQRLYDTAPSIIDFMPYAEY
LPQERCILLDDGVSVGAVYEVIPIGTEGRPAERLDEIRDTVEDALQDSLPELDSHQWVVQ
FYCQDETDVTEYIDRLRGYVKPWAEGTAFTKAWLAESERHMKSISVEKGLFEDKIVTGAP
WRGQARRTRMVIYRYVETPVRDQMSPVVMLNQVCDRVTSALAGASIKCHRQNGEQIHGWL
LRWFNPNPRWVAPDALYHSAHHDDGGPGSLPLMNDFSESLWYTRPRSDAERGIWWFDDIA
HKAVPVEALRRVPQTGHLTGEVRRGDTINALMDLMPQGSMLVMTLIVQPQDVLEEQFNKL
GRDAMGENVDSARAREDAQTAKAYLGERHKLYRAAITFLLRAPDTDTLSKRQLDLNSKLL
NNGMKPVNPEHDVAPLNGYLRALPMAFNPELDKQHWYSRLMFVQHFACMLPVFGRDTGTG
NPGLSFFNRGGAPLTFDPMNKADRTQNAHLLLFGPTGSGKSATLCSGLSQTMALHRPRLF
LLEAGNSFGLYGDYCESLGLTVNKISIKPGRGVSLAPFADSHLLLEAAPNTLITDEDKLP
ELDEIKDDDGDDERDVLGEMEIAARLMVTGGEAAEELRMTRADRGMLREAILIAAHAAHD
EQTQMLPEHLMKALESIARDNSRDSEGRERRTAARRARAEEMSEALRMFTEGFEGELFNR
PGIPWPESDVTIIDLGTLAREGYEAQMAVAVIALINTVNNIAERDQYLDREIVMVIDEAH
IVTTNPLLSPYVTKVVKMWRKLGAWLWLATQNLKDYPSVSEKMLNMAEWWLCLTMPPDEV
EQIARFKTLTAEQKAMLLSATKLPRCYTEGVVLSTRVQALFRSVPPSLYLALGMTEKEEK
AERRELMQQFNCSELEAAFRVAKRLDVARGILSERAEIL