Protein Info for DZA65_RS04930 in Dickeya dianthicola ME23

Annotation: pilus assembly protein PilR

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 359 transmembrane" amino acids 122 to 145 (24 residues), see Phobius details amino acids 180 to 199 (20 residues), see Phobius details amino acids 330 to 350 (21 residues), see Phobius details PF00482: T2SSF" amino acids 24 to 152 (129 residues), 44.9 bits, see alignment E=5.4e-16 amino acids 227 to 344 (118 residues), 42.3 bits, see alignment E=3.6e-15

Best Hits

KEGG orthology group: None (inferred from 68% identity to spq:SPAB_05361)

Predicted SEED Role

"IncI1 plasmid conjugative transfer inner membrane protein PilR" in subsystem Type 4 conjugative transfer system, IncI1 type

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4CP69 at UniProt or InterPro

Protein Sequence (359 amino acids)

>DZA65_RS04930 pilus assembly protein PilR (Dickeya dianthicola ME23)
MHVFRRLRYYLVRHSFTSRYRQPFYETLRFLLDNKTPLAEALQMIGDVHTDFGRRWSPYI
ELVDDCLEALSDNRAGRELQDVLAVWAPSEEAALISAGMQSGGLPRALMQADKLIMARRR
ILLQVLFASIYPLVLVILGGALLAVNNLMLVPTLSTMSDPKNWSGALGLMNTIATWTSEW
GVVAGVGGVLLVIGVTWSLPRWCGQLRILADYALPWSLYKDLQGAVFLMNVAALLGAGVP
ELKALQVLHGYGSAWLQERLEAAMDCMTGGDALGMALRHCGYRFPSQEAANYLSLLGKGD
GASSLISNYADRWLEQALQQVARRANTAKFFSLLLIITFFLLILEMVMQIQDIVSLSVH