Protein Info for DZA65_RS04830 in Dickeya dianthicola ME23

Annotation: ATP synthase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 585 TIGR03764: integrating conjugative element, PFGI_1 class, ParB family protein" amino acids 31 to 295 (265 residues), 380.9 bits, see alignment E=1.8e-118

Best Hits

Predicted SEED Role

"Protein with ParB-like nuclease domain in PFGI-1-like cluster"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4C8P6 at UniProt or InterPro

Protein Sequence (585 amino acids)

>DZA65_RS04830 ATP synthase (Dickeya dianthicola ME23)
MKGVKSIHSLNLADAMLQGGREPAINNGMAVLPVSEMPMLLTLDQLRPNPDNPRTSRNPR
YDEIKASIRARGLDSLPKVTCDPEGAGEYIFSDGGNTRYKILCELWKETGDERFYRIHVV
FKPWPGRLKCVIGHLAENEVRGDLSYIEKAVGVNNARKIWETELGRSVTLRELSDLLNQE
GYPVHYSTISRMEDTIRHLYPHLPNLLDAGLPRLQVLSLLNLRSAAETTWKKFSFTADTD
PVFSFDEAFARTCVNFDNIDTYSIEMFRDEFIGQLLQALPHPSLNYDRWLIELDPAEQQR
RALFGEPPAFTPPVQPQETVAPNSQTEVPDSKTVKVLPPQESERQQSAGLRSGTLIQNTP
PEPASSASGTVMQEEEQTTTVPPMPAHGVTTAERVIPPNVVGLQSPPRVELQPDMYGGDP
VLSGELVSAIGEPECSTSAGETSLAFAAVGLEPVTDIWHISALQDDIEHLQDMAYRLAYE
MAEMMGCADCISDDRSEHSVGYAVHSISSSAFPAFLNGITGNDDGNEAFNLFAFTLWLTG
SEKKGDSPVFNDVAVVKLMRLIRVIRRLRELQRAVSVQEGTDHVS