Protein Info for DZA65_RS04455 in Dickeya dianthicola ME23

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 459 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details transmembrane" amino acids 45 to 64 (20 residues), see Phobius details amino acids 76 to 99 (24 residues), see Phobius details amino acids 103 to 119 (17 residues), see Phobius details amino acids 135 to 153 (19 residues), see Phobius details amino acids 159 to 181 (23 residues), see Phobius details amino acids 194 to 214 (21 residues), see Phobius details amino acids 220 to 239 (20 residues), see Phobius details amino acids 260 to 285 (26 residues), see Phobius details amino acids 291 to 314 (24 residues), see Phobius details amino acids 326 to 345 (20 residues), see Phobius details amino acids 353 to 370 (18 residues), see Phobius details amino acids 390 to 410 (21 residues), see Phobius details amino acids 422 to 443 (22 residues), see Phobius details PF07690: MFS_1" amino acids 12 to 259 (248 residues), 84.8 bits, see alignment E=2.8e-28

Best Hits

KEGG orthology group: None (inferred from 93% identity to ddd:Dda3937_01445)

Predicted SEED Role

"FIG00613870: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4CRH8 at UniProt or InterPro

Protein Sequence (459 amino acids)

>DZA65_RS04455 MFS transporter (Dickeya dianthicola ME23)
MAGSRALFWLASVAFFMQSLDTTMLYVAVPAMAHTLREPVLRMEPVVMAYLVAVVAFTPL
NSWLSQRMGERRTCQLALLTFIAGALLCNQATSAVTLALCRCLQGAGGALLLPVLRTQAL
RATTPEQKLPFLNRMTLLGLLGTLTGPLAGSLLTDALGWRAIFLAPIPLSLLCLWLTGYA
IPDGVAPSSRRIPLRSLLLLTAALLLFALLLVAAPKRLLPLPALTLIALAGSGCGWLYLR
GDRYAREVLLPASLFGIRTFYVGVWGGVLTRLLLASLPVVISLVIQTALGLTPAIAGIIM
LLFSAGALLAKLLFEPLVRRAGYRQLLIAATLLAALAVLALGAAIQQRSLPCIGALSGLL
GVLTALLHSAESTLACCHLENDACNSGSTILLLSQLLAVMLSMALTFPALRALSHLSPWL
HISPFSLLFALLGVGLALSCLLFRHLGHEDGNVLLSPSS