Protein Info for DZA65_RS04430 in Dickeya dianthicola ME23

Annotation: multidrug/biocide efflux PACE transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 155 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 48 to 70 (23 residues), see Phobius details amino acids 91 to 110 (20 residues), see Phobius details amino acids 116 to 138 (23 residues), see Phobius details PF05232: BTP" amino acids 14 to 76 (63 residues), 88.1 bits, see alignment E=1.5e-29 amino acids 82 to 145 (64 residues), 79.9 bits, see alignment E=5.7e-27

Best Hits

KEGG orthology group: None (inferred from 93% identity to ddd:Dda3937_01440)

Predicted SEED Role

"Putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385XTR6 at UniProt or InterPro

Protein Sequence (155 amino acids)

>DZA65_RS04430 multidrug/biocide efflux PACE transporter (Dickeya dianthicola ME23)
MQPQIQQKARHEHKTFRERIAHAIGFEVMALLICAPVGAWVLGRSILQVGALSIMLSSVA
MVWNVAYNGLFDRLWPVSRIRRGLWVRMGHALGFEGGFILIGLPLAAWMLNITLWQALMV
EIGFFLFFLPYTMTYNWLYDLLRERLLATARISAS