Protein Info for DZA65_RS03695 in Dickeya dianthicola ME23

Annotation: acetate--CoA ligase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• TIGR02188: acetate--CoA ligase
  • amino acids 20 to 643 (624 residues), 1025.8 bits, E=0
• PF16177: ACAS_N
  • amino acids 24 to 81 (58 residues), 76.6 bits, 1.5e-25
• PF00501: AMP-binding
  • amino acids 84 to 467 (384 residues), 283.4 bits, E=3.9e-88
• PF13193: AMP-binding_C
  • amino acids 531 to 609 (79 residues), 93.6 bits, E=1.8e-30

Best Hits

Swiss-Prot: 85% identical to ACSA_YERE8: Acetyl-coenzyme A synthetase (acs) from Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)

KEGG orthology group: K01895, acetyl-CoA synthetase [EC: 6.2.1.1] (inferred from 98% identity to ddd:Dda3937_02455)

MetaCyc: 82% identical to acetyl-CoA synthetase (AMP-forming) (Escherichia coli K-12 substr. MG1655)
Propionate--CoA ligase. [EC: 6.2.1.17]; Acetate--CoA ligase. [EC: 6.2.1.17, 6.2.1.1]

Predicted SEED Role

"Acetyl-coenzyme A synthetase (EC 6.2.1.1)" in subsystem Ketoisovalerate oxidoreductase or Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate (EC 6.2.1.1)

MetaCyc Pathways

• ethanol degradation II (3/3 steps found)
• ethanol degradation IV (3/3 steps found)
• superpathway of acetate utilization and formation (3/3 steps found)
• acetate and ATP formation from acetyl-CoA III (1/1 steps found)
• acetate conversion to acetyl-CoA (1/1 steps found)
• chitin deacetylation (3/4 steps found)
• L-isoleucine biosynthesis V (2/3 steps found)
• ethanol degradation III (2/3 steps found)
• L-isoleucine biosynthesis IV (4/6 steps found)
• reductive glycine pathway of autotrophic CO₂ fixation (6/9 steps found)
• acrylate degradation II (1/3 steps found)
• 2-methylcitrate cycle I (2/5 steps found)
• superpathway of coenzyme A biosynthesis II (plants) (5/10 steps found)
• 2-methylcitrate cycle II (2/6 steps found)
• β-alanine biosynthesis II (1/6 steps found)
• adlupulone and adhumulone biosynthesis (1/6 steps found)
• colupulone and cohumulone biosynthesis (1/6 steps found)
• lupulone and humulone biosynthesis (1/6 steps found)
• cis-geranyl-CoA degradation (1/9 steps found)
• superpathway of bitter acids biosynthesis (3/18 steps found)

KEGG Metabolic Maps

• Glycolysis / Gluconeogenesis
• Propanoate metabolism
• Pyruvate metabolism
• Reductive carboxylate cycle (CO2 fixation)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 6.2.1.1 or 6.2.1.17

Sequence Analysis Tools

See A0A3A4C498 at UniProt or InterPro

Protein Sequence (653 amino acids)

>DZA65_RS03695 acetate--CoA ligase (Dickeya dianthicola ME23)
MSQYNKHPIPAAIAENALITAEQYKKMYQESVQDPDTFWREQGKIVDWIKPYQQVKNTSF
DPGHVRIRWFEDGTLNVAANCLDRHLDTLGDQTAIIWEGDDAGESKKVTYRELYQAVCRF
ANVLKSKGIRKGDVVAIYMPMVPEAAVAMLACARVGAVHSVIFGGFSPESIAGRIVDSSA
KLVVTADEGIRAGRAIPLKKNIDEALRNPAVTSVNHVIVFQRTGKPGNWQDGRDLWWHEL
VAQVDDYCPPEEMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAATFKYVFDYHPGDV
YWCTADVGWVTGHSYLLYGPLTCGAITLMFEGVPNWPTASRMGQVVDKHQVNILYTAPTA
IRALMADGDKAVEGTSRQSLKIMGSVGEPINPEAWEWYFRKIGNSRCPIVDTWWQTETGG
FMITPLPGAIEAKPGSATLPFFGVQPALVDNLGNPQDGACEGNLVITDSWPGQARTLFGD
HERFEQTYFSTFKGMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVSHP
KIAEAAVVGIPHSLKGQAIYAYITLNHGEEPTSELYAEVRNWVRKEIGPIATPDILHWTD
ALPKTRSGKIMRRILRKIAAGDTSNLGDISTLADPGVVEKLLEEKQAMSHTPS