Protein Info for DZA65_RS03325 in Dickeya dianthicola ME23

Annotation: ATP-grasp domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 412 PF02655: ATP-grasp_3" amino acids 107 to 284 (178 residues), 44.7 bits, see alignment E=3.9e-15 PF01071: GARS_A" amino acids 115 to 225 (111 residues), 33 bits, see alignment E=1.4e-11 PF02786: CPSase_L_D2" amino acids 116 to 199 (84 residues), 26.5 bits, see alignment E=1.1e-09 PF07478: Dala_Dala_lig_C" amino acids 136 to 236 (101 residues), 24.5 bits, see alignment E=4.5e-09 PF13535: ATP-grasp_4" amino acids 142 to 284 (143 residues), 66 bits, see alignment E=7.8e-22

Best Hits

KEGG orthology group: None (inferred from 66% identity to dda:Dd703_2162)

Predicted SEED Role

"FIG01219795: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385XTY4 at UniProt or InterPro

Protein Sequence (412 amino acids)

>DZA65_RS03325 ATP-grasp domain-containing protein (Dickeya dianthicola ME23)
MKKIAIVDGFSSGKFIAKGLHDKGCELVHISSSSQLDDYYYNGFDYGIYSESIIHENMSK
TIDFIKKFNAEYVIAGTESGVTLADKINNELLLPYRNSIEASSSRRNKYDMIETIRSAGL
NAANQIKISMWEEALSWLQKGKYPVVLKPLESAGSDGVFICHNEEEVQLAFEQVAKKKNK
LNLINEQVLLQEFLEGTEYVVNFVSLNGAFVVTEVVKYYKRKLESGNIVYDIDEIIDSTS
DEFELLVKYTANVCACLGIKNGPSHAEVMLTKNGPCLVEIAARSDGILRPDVSSSSTGMG
QLTATVLSITEPENFLMLSRQPFYKLKNFSFNVCLISPKTSVFNDVDIISLAKTLPSFKR
IELYLSSGDNVSKTKDVFSQPGTIYLVSSNKSQLWDDYKVIRESEETGIYLN