Protein Info for DZA65_RS03225 in Dickeya dianthicola ME23

Annotation: ribosome maturation factor RimP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 PF02576: RimP_N" amino acids 11 to 82 (72 residues), 102 bits, see alignment E=2e-33 PF17384: DUF150_C" amino acids 85 to 150 (66 residues), 77.5 bits, see alignment E=7.4e-26

Best Hits

Swiss-Prot: 91% identical to RIMP_SHIB3: Ribosome maturation factor RimP (rimP) from Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)

KEGG orthology group: K09748, ribosome maturation factor RimP (inferred from 99% identity to ddd:Dda3937_02343)

Predicted SEED Role

"FIG000325: clustered with transcription termination protein NusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385XV68 at UniProt or InterPro

Protein Sequence (150 amino acids)

>DZA65_RS03225 ribosome maturation factor RimP (Dickeya dianthicola ME23)
MSTLEQKLTEMISAPVEALGYELVGIEFIRGRQSTLRIYIDSEDGITVDDCADVSHQVSA
VLDVEDPISVAYNLEVSSPGLERPLFTAAHYERFVGEEVSLVLRMAVQNRRKWQGIIKSV
EGEMITATVEGKDEVFALSNIQKANLVPHF