Protein Info for DZA65_RS03010 in Dickeya dianthicola ME23
Annotation: pectate lyase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 60% identical to PELD_PSEMA: Pectin lyase (pnl) from Pseudomonas marginalis
KEGG orthology group: None (inferred from 98% identity to ddd:Dda3937_03551)Predicted SEED Role
"Pectin lyase (EC 4.2.2.10)" in subsystem D-Galacturonate and D-Glucuronate Utilization (EC 4.2.2.10)
Isozymes
Compare fitness of predicted isozymes for: 4.2.2.10
Use Curated BLAST to search for 4.2.2.10
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A385XT25 at UniProt or InterPro
Protein Sequence (315 amino acids)
>DZA65_RS03010 pectate lyase (Dickeya dianthicola ME23) MAYPTTGTSGMVGFATSGSTTGGKGGTVVSITSLNDLKTHVAGTDTKILVINANISASSL TKVTLGANKSIIGSYSSNTLTNIHFRSSSSSKNIIFQNLTFKHTSTINGNDDIQIYLTHG NKYWLDHLTFPGHDYTLTDGGLDKLIYIGEKADYVTISNCLFKNHEYGLILGYPQDGSSN GSTYDGYPHLTICHCYFSNIYVRAPGLMRYGYYHAYNNFIDKYQLGFTLAQNAKIVSEYN YFGTTTSSNKGMLDDKGTGTFTDTGSTPSITNQTSSASKWTPSSNYSYTLKTVSEAKTFT QKYAGAQSASLTFGG