Protein Info for DZA65_RS02900 in Dickeya dianthicola ME23

Annotation: pirin family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 236 PF02678: Pirin" amino acids 6 to 119 (114 residues), 77.6 bits, see alignment E=7.1e-26 PF17954: Pirin_C_2" amino acids 143 to 234 (92 residues), 63.1 bits, see alignment E=2.3e-21

Best Hits

Swiss-Prot: 71% identical to YHAK_ECOLI: Pirin-like protein YhaK (yhaK) from Escherichia coli (strain K12)

KEGG orthology group: K06911, (no description) (inferred from 93% identity to ddd:Dda3937_02728)

Predicted SEED Role

"Pirin-like protein YhaK"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4CAB5 at UniProt or InterPro

Protein Sequence (236 amino acids)

>DZA65_RS02900 pirin family protein (Dickeya dianthicola ME23)
MIISRAAEQCGQADYGWLQARYTFSFGHYFDPDLLGFASLRVLNQEVLAPGASFQPRTYP
RVDILNILLQGEAEYRDSNGNHTRAKAGEALLLATQPNVSYSEHNIGDNTPLTRLQLWLD
ACPTRENQRLQRLSLEEQQPYQLLASPDEAANAFHLRQQVWIHHLNLAAGEQHNLTLNGN
RAYLQSIYGTLCINSNGGAAIPNVLRCGDGAFIQQENSLIIRAETATRALLIDLVV