Protein Info for DZA65_RS02820 in Dickeya dianthicola ME23

Annotation: tyrosine-type recombinase/integrase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 419 PF13356: Arm-DNA-bind_3" amino acids 3 to 87 (85 residues), 90.1 bits, see alignment E=8.1e-30 PF00589: Phage_integrase" amino acids 208 to 383 (176 residues), 67.5 bits, see alignment E=1.3e-22

Best Hits

Swiss-Prot: 58% identical to INTB_ECOLI: Putative protein IntB (intB) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_03406)

Predicted SEED Role

"Integrase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4CN77 at UniProt or InterPro

Protein Sequence (419 amino acids)

>DZA65_RS02820 tyrosine-type recombinase/integrase (Dickeya dianthicola ME23)
MPLTDTAIRNAKPLDKPYKLSDAQGLYLLIKPNGSKLWHLKYRFGGKEKKLAFGAYPTVS
LASARKLREEARTILSAGDDPGVKKQHDKQAKKNGNTFEAIARQWVAANIRWSEAHAAKV
LRSLELHVFPLIGNVLVTDLKTANLLIPLRVAEKKGCLETAARIQQRTTVIMRYAVQEGL
IASNPANDLCGAITPPPKNHYPALPLERLPELLERIEGYSGRLLTRLAVQLNLLIFIRSS
ELRFARWTEIDLDNAMWTLPAQREPITGVRHSERGAKMKTPHLVPLSKQAVTVLKQLKLL
SGNGDLLFPGDHDARKPMSENTINKALRTMGYDTQADICGHGFRTIACSALIESGRWSKD
AVERQMSHQERNHVRAAYIHKAEHLDERTQMMQWWSDYLDVCQHQFIPAYRFEKSIKVA