Protein Info for DZA65_RS02780 in Dickeya dianthicola ME23

Annotation: IS630 family transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 345 PF13384: HTH_23" amino acids 28 to 73 (46 residues), 34.1 bits, see alignment 5.4e-12 PF13518: HTH_28" amino acids 29 to 78 (50 residues), 29.3 bits, see alignment 2.3e-10 PF13565: HTH_32" amino acids 56 to 136 (81 residues), 42.2 bits, see alignment E=2.8e-14 PF13592: HTH_33" amino acids 108 to 155 (48 residues), 32.6 bits, see alignment 1.4e-11 PF13358: DDE_3" amino acids 177 to 312 (136 residues), 109.9 bits, see alignment E=3.1e-35

Best Hits

Swiss-Prot: 66% identical to YIS5_SHISO: Insertion element IS630 uncharacterized 39 kDa protein from Shigella sonnei

KEGG orthology group: None (inferred from 97% identity to dze:Dd1591_0667)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (345 amino acids)

>DZA65_RS02780 IS630 family transposase (Dickeya dianthicola ME23)
MPIIAAIPDEERQLMCKEAQQTRDKNYARRLIAMLMLHRGMTVTEVARLLCAARSSVGRW
INWFTLQGVEGLKSLRPGRVPCWPVADIQRVLPLLVQRSPKDFGWLRSRWSTELLTRIVN
RLFDVTLHRSTLHRYLKQAGMVWRRAAPTLKIRDPYYDEKRLAIEQALAQDSAANPVFYQ
DEVDIDLNPKIGADWMPKGQQKRIATPGQNQKHYLAGALHSGTGRVAYVSGNSKSSDLFI
NLLEALRRTYRRAKTITLVVDNYIIHKSRKVERWLEENSKFRLLFLPTYSPWLNPIERLW
LSLHETITRNHQCRYMWQLLKQVTQFMNAASPFPGNQPGLAKVER